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EMAGE:31149

Capns1 ( MGI:88266)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
medulla oblongata basal plate mantle layer
strong strong
regionalstrong expression: see section 08 09 15
nucleus pulposus
strong strong
regionalstrong expression: see section 13 14 15
ventral grey horn
strong strong
regionalstrong expression: see section 10 11 12 13 14 15
pons mantle layer
strong strong
regionalstrong expression: see section 07 15 16
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5875
Entity Detected:Capns1, ( MGI:88266)
Sequence:sense strand is shown

>T5875
CTGCAGCAGGCGAGCAAGACCGCGGACCGCCGGATCCGACTCAGCTGCGATCATGTTCTTGGTGAATTCG
TTCTTGAAGGGCGGCGGTGGCGGTGGGGGAGGCGGGGGTCTGGGCGGGGGCCTGGGGAATGTGCTCGGAG
GCCTGATCAGCGGAGCTGCTGGCGGCGGCGGCGGTGGCGGTGGAGGCATGGGACTGGGAGGAGGTGGCGG
AGGCGGTGGAACTGCCATGCGCATCCTGGGCGGAGTCATTAGCGCCATCAGCGAGGCTGCTGCGCAGTAC
AACCCGGAGCCTCCGCCTCCACGTAGTCATTACTCCAATATTGAGGCCAACGAGAGTGAAGAAGTCCGTC
AGTTCAGGAAACTTTTTGTCCAGCTGGCTGGAGACGACATGGAGGTCAGCGCCACAGAACTCATGAATAT
CCTCAACAAGGTCGTGACCCGACACCCGGATCTGAAAACTGATGGTTTTGGCATTGACACTTGTCGGAGC
ATGGTGGCCGTCATGGATAGCGACACCACAGGCAAGCTGGGCTTTGAGGAGTTCAAATACCTCTGGAACA
ACATTAAAAAGTGGCAGGCTATATACAAACGCTTTGATACTGACCGATCAGGGACTATCGGTAGCCATGA
ACTTCCAGGGGCCTTTGAGGCAGCAGGATTCCACCTGAATGAGCATCTCTACAGCATGATCATCCGGCGC
TACGCAGATGAGAGCGGGAACATGGATTTCGATAACTTCATCAGCTGCTTGGTCAGGCTAGATGCCATGT
TCCGCGCTTTCAAATCTCTTGACAAAAATGGCACCGGACAGATCCAAGTGAACATCCAGGAGTGGCTGCA
GCTGACTATGTATTCCTGAATGGGAGTGGCAGACCTGCCCCCTCACAGCTCACTATGGAGCCACCTTGAA
CCCTGATCCTGACTGCAGCCGCATTTTCATGGTCATGTCCTGCTACCCAGAGGCCTTTCGTCTCCCTGTT
CTGGTACCCAGCTTCCCAATCAGCAGCCAGAGCTCAACATGCCACACCTTGCTGCACCCTGAGTTACCCC
TGGCTCTGAGACAAGCTAGCTTGTTCTACTGAAGGGTCACCCCACCCTAGCACACCCAATCCACGCCATC
TGTTACCTTCATCCTGTCTGTGTGCCAAGCCTAGCACTCCTGCTGCTTCCATGTCCCAAGGGCCCTGTCT
TAGTTCTGGGAGGATCACACCTGTCCCTACACACCCTGTTACACACTCACACAGTTACCTCCCAGGCAGC
CAGATGAACTCCAGGCCATGGCAGGTCCACACACCCTAGTGCCTACGCCTGCTCTGTGCTCCCCCTGCAC
AGCGGTCGGGCCCAGGAGAAAATAAACTCTCTCTACTTGCTGCTTCCTTCGGACTCTGAGTGCTGAGTCC
AGGCAGGAGGGAACATGAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3156021 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3156021 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_007147 same experiment
 EMAGE:30833 same embryo
 EMAGE:30164 same embryo
 EMAGE:30001 same embryo
 EMAGE:29951 same embryo
 EMAGE:31080 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS