EMAGE mouse gene expression spatial database

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EMAGE:31350

Cadm1 cell adhesion molecule 1 ( MGI:1889272)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_002076_01	euxassay_002076_02	euxassay_002076_03	euxassay_002076_04	euxassay_002076_05

euxassay_002076_06	euxassay_002076_07	euxassay_002076_08	euxassay_002076_09	euxassay_002076_10

euxassay_002076_11	euxassay_002076_12	euxassay_002076_13	euxassay_002076_14	euxassay_002076_15

euxassay_002076_16	euxassay_002076_17	euxassay_002076_18	euxassay_002076_19	euxassay_002076_20

euxassay_002076_21	euxassay_002076_22	euxassay_002076_23

View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

pituitary gland

strong

regional

strong expression: see section 09 10 11 12 13

vestibulocochlear viii ganglion

strong

regional

strong expression: see section 04 05 06 07 15 16 17

cervico-thoracic ganglion

strong

regional

strong expression: see section 07 08 13

spinal cord

strong

homogeneous

strong expression: see section 06 07 08 09 10 11 12 13

thoracic ganglion

strong

regional

strong expression: see section 07 08 09 10

cochlea

moderate

regional

moderate expression: see section 01 02 03 04 05 06 16 17 18

facial vii ganglion

strong

regional

strong expression: see section 03 04 05 06 17 18 19

lower jaw molar

strong

regional

strong expression: see section 06 07 15 16 17 18

vagus x ganglion

strong

regional

strong expression: see section 07 15

pharyngo-tympanic tube

strong

regional

strong expression: see section 01 02 21 22 23

upper jaw molar

strong

regional

strong expression: see section 05 06 07 11 15 16 17 18 19

trachea

strong

regional

strong expression: see section 11 moderate expression: see section 10

trigeminal v ganglion

strong

regional

strong expression: see section 02 03 04 05 06 07 15 16 17 18 19 20

vibrissa

moderate

regional

moderate expression: see section 03 04 05 06 07 18 19 20

nasal cavity olfactory epithelium

strong

regional

strong expression: see section 07 08 09 10 11 13 14 15 16 17

cervical ganglion

strong

regional

strong expression: see section 07 14

orbito-sphenoid

strong

regional

strong expression: see section 03 04 05 19 20 moderate expression: see section 01 02 21 22

frontal bone primordium

moderate

regional

moderate expression: see section 01 02 21 22

urethra of male

moderate

regional

moderate expression: see section 09 10 11

brain

strong

homogeneous

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

glossopharyngeal ix ganglion

strong

regional

strong expression: see section 05 06 16 17

dorsal root ganglion

strong

regional

strong expression: see section 05 06 07 10 11 12 13 14 15

meckel's cartilage

strong

regional

strong expression: see section 03 04 05 06 07 09 14 15 16 17 18 19 20 21

submandibular gland primordium

strong

regional

strong expression: see section 06 07 15 16 moderate expression: see section 08 14

renal cortex

strong

regional

strong expression: see section 02 03 04 05 06 11 12 13 14

lower jaw incisor

strong

regional

strong expression: see section 09 10 13 14

upper jaw incisor

strong

regional

strong expression: see section 09 10 13 14

lung

strong

spotted

strong expression: see section 01 02 03 04 05 06 07 10 11 12 13 14 15 16 17 18 19 moderate expression: see section 08 09

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5460
Entity Detected:	Cadm1, cell adhesion molecule 1 ( MGI:1889272)
Sequence:	sense strand is shown >T5460 GCAGGTGCCCGACATGGCGAGTGCTGTGCTGCCGAGCGGATCCCAGTGTGCGGCGGCAGCGGCTGTGGCG GCGGCGGCGGCGCCTCCAGGGCTCCGGCTCCGGCTCCTGCTGTTGCTCCTTTCGGCCGCGGCACTGATCC CCACAGGTGATGGACAGAATCTGTTTACTAAAGACGTGACAGTGATTGAAGGAGAAGTGGCAACCATCAG CTGCCAGGTCAATAAGAGTGACGACTCAGTGATCCAGCTCCTGAACCCCAACAGGCAGACCATTTACTTC AGGGACTTCAGGCCTTTGAAGGACAGCAGGTTTCAGCTGCTGAATTTTTCTAGCAGTGAACTCAAAGTGT CACTGACGAATGTCTCAATCTCGGATGAAGGGAGATACTTCTGCCAGCTCTACACGGACCCCCCACAGGA GAGTTACACCACCATCACAGTCCTGGTTCCTCCACGTAACTTGATGATCGATATCCAGAAAGACACGGCA GTTGAAGGGGAGGAGATTGAAGTCAACTGTACTGCCATGGCCAGCAAGCCAGCGACGACCATCAGGTGGT TCAAAGGGAACAAGGAACTCAAAGGCAAATCAGAGGTGGAGGAGTGGTCGGACATGTACACTGTGACCAG TCAGCTGATGCTGAAGGTGCACAAGGAGGACGACGGGGTCCCGGTGATCTGCCAGGTGGAGCACCCTGCG GTCACTGGAAACCTGCAGACCCAGCGCTATCTAGAAGTGCAGTATAAACCGCAAGTGCATATCCAGATGA CTTACCCTCTGCAAGGCCTAACCCGGGAAGGGGATGCATTTGAGTTAACGTGTGAAGCCATCGGGAAGCC CCAGCCTGTGATGGTAACTTGGGTGAGAGTCGATGATGAAATGCCTCAACATGCCGTACTGTCTGGGCCA AACCTGTTCATCAATAACCTAAACAAAACAGATAACGGTACTTACCGCTGTGAGGCTTCCAACATAGTGG GAAAGGCTCATTCGGACTATATGCTGTATGTATACGATCCCCCCACAACTATCCCTCCTCCCACAACAAC CACCACCACTACCACCACCACCACCACCACCATCCTTACCATCATCACAGATTCTCGAGCAGGTGAAGAG GGGACCATTGGGGCAGTGGACCACGCAGTGATTGGTGGCGTCGTAGCCGTGGTGGTGTTTGCCATGCTAT GCTTGCTCATCATTCTGGGCCGCTATTTTGCCAGACATAAAGGTACATACTTCACTCATGAAGCCAAAGG AGCCGATGACGCAGCAGACGCAGACACAGCTATAATCAATGCAGAAGGAGGACAGAACAACTCCGAAGAA AAGAAAGAGTACTTCATCTAGATCAGCCTTTTTGTTCCAATGAGGTGTCCAACTGGCCTGTTTAGATGAT AAAGAGACAGTGATACTGGAACTTTCGAGAAGCTCGTGTGGTTTTTTGTTTTGTTTTGTTTTTTTATGAG TGGGTGGAGAGATGCGAGACTGGGAAGGCTTGGGATTTGCAATGTACAAACAAAAACAAAGAATGTTCTT TGAAAGTACACTCTGCTGTTTGACACCTCTTTTTAATCTGGTTTTAATTTGCTTTGGGTTTTGGGTTTTT TTGGTTTTTTGTTTTTTTCATTTATATTTCTTCCTACCAAGTCAAACTTGGGTACTTGGATTTGGTTTCG GTAGATTGCAGAAAATTCTGTGCCTTGTTTTTCATTCGTTTGTTGTGTTTCTTCCCTCTTGCCCATTTAT TTTTCCCAAAATCAAATTTGTTTTTTTCCCCCTCCCAAACCTCCCATTTTTTGGAATTGACCTGCTGGAA TTCCTAAGACTTTCTCCCTGTTGCCAGTTTCTTTTATTTGTGTTAACGGTGACTGCTTTCTGTTCCAAAT TCAGTTTCATAAAAGGAAAACCAGCACAATTTAGATTTCATAGTTCAGAATTTAGTGTCTCCATGATGCA TCCTTCTCTGTTGTTGTAAAGATTTGGGTGAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5372277 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5372277 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_002076 same experiment
	EMAGE:29480 same embryo
	EMAGE:31829 same embryo
	EMAGE:31348 same embryo
	EMAGE:31357 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source