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EMAGE:31484

Chad ( MGI:1096866)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484
euxassay_006850_01 euxassay_006850_02 euxassay_006850_03 euxassay_006850_04 euxassay_006850_05
EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484
euxassay_006850_06 euxassay_006850_07 euxassay_006850_08 euxassay_006850_09 euxassay_006850_10
EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484
euxassay_006850_11 euxassay_006850_12 euxassay_006850_13 euxassay_006850_14 euxassay_006850_15
EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484
euxassay_006850_16 euxassay_006850_17 euxassay_006850_18 euxassay_006850_19 euxassay_006850_20
EMAGE:31484 EMAGE:31484 EMAGE:31484 EMAGE:31484
euxassay_006850_21 euxassay_006850_22 euxassay_006850_23 euxassay_006850_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
hindlimb digit 5 mesenchyme
strong strong
regionalstrong expression: see section 21 22 23 moderate expression: see section 06 07
humerus
strong strong
regionalstrong expression: see section 04 05 06 22 23 24 moderate expression: see section 03
hindlimb digit 4 mesenchyme
strong strong
regionalstrong expression: see section 04 05 21 22 23 24 moderate expression: see section 06 07
axial skeleton tail region
strong strong
regionalstrong expression: see section 14 15
viscerocranium
strong strong
regionalstrong expression: see section 08 09 10 11 18 19 20 21
otic capsule
strong strong
regionalstrong expression: see section 18 19 moderate expression: see section 07 08 09 10 17 20
hindlimb digit 3 mesenchyme
strong strong
regionalstrong expression: see section 04 05 21 22 23 24 moderate expression: see section 06 07
tibia
strong strong
regionalstrong expression: see section 02 03 moderate expression: see section 01
femur
strong strong
regionalstrong expression: see section 02 03 moderate expression: see section 01
nasal septum
strong strong
regionalstrong expression: see section 13 14 15 16 17 18
orbito-sphenoid
strong strong
regionalstrong expression: see section 01 02 06 08 09 12 13 15 16 18 19 20 21 22 moderate expression: see section 03 04 05 weak expression: see section 23 24
cricoid cartilage
moderate moderate
regionalmoderate expression: see section 15
thoracic intervertebral disc
strong strong
regionalstrong expression: see section 12 13 14 15 16 17
hindlimb digit 1 mesenchyme
strong strong
regionalstrong expression: see section 05 23 24 moderate expression: see section 06
temporal bone
strong strong
regionalstrong expression: see section 02 moderate expression: see section 03 04 05 06 weak expression: see section 23 24
lumbar intervertebral disc
strong strong
regionalstrong expression: see section 12 13 14 15 16 17
thyroid cartilage
strong strong
regionalstrong expression: see section 14 moderate expression: see section 12 13 15 weak expression: see section 16
fibula
strong strong
regionalstrong expression: see section 02 03 moderate expression: see section 01
trachea cartilaginous ring
moderate moderate
regionalmoderate expression: see section 14 15
rib
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 10 11 12 13 14 15 16 17 22 23 24 moderate expression: see section 09 18 19 20 21
hindlimb digit 2 mesenchyme
strong strong
regionalstrong expression: see section 04 05 22 23 24 moderate expression: see section 06 07
meckel's cartilage
strong strong
regionalstrong expression: see section 14 15 moderate expression: see section 16
basioccipital bone
strong strong
regionalstrong expression: see section 01 02 03 04 23 24 moderate expression: see section 05 06
cervical intervertebral disc
strong strong
regionalstrong expression: see section 09 10 11 12 13 14 15 16 17 18
scapula
strong strong
regionalstrong expression: see section 03 04 05 23 24
sacral vertebral cartilage condensation
strong strong
regionalstrong expression: see section 12 13 14 15 16 17
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7373
Entity Detected:Chad, ( MGI:1096866)
Sequence:sense strand is shown

>T7373
CCACGCGTCCGCGGACGCGTGGGTCGACCCACGCGTCCGGCCCAGGCTCAAGGCGTTCCAACCATGGCCC
GCGCGCTCTTATTCAGTCTGGTCTTTCTTGCCATCCTCCTGCCTGCGCTGGCCGCCTGCCCCCAAAACTG
CCACTGCCATGGAGATCTGCAGCATGTCATCTGCGACAAGGTGGGGCTGCAGAAGATCCCCAAGGTATCA
GAGACAACCAAACTGCTCAATCTCCAGCGCAACAACTTCCCGGTGCTGGCTGCCAACTCGTTTCGGACCA
TGCCGAACCTGGTCTCCCTGCACCTGCAACACTGCAACATCCGCGAGGTGGCGGCTGGTGCCTTCCGAGG
CCTGAAGCAGCTTATCTACCTGTACCTGTCCCACAACGACATCCGGGTATTGCGAGCTGGAGCCTTCGAC
GACCTGACTGAACTCACTTACCTCTATCTAGACCACAACAAAGTGTCGGAACTGCCCCGGGGGTTGCTCT
CTCCTCTGGTCAACCTCTTCATCTTGCAACTCAACAACAACAAAATCCGAGAGCTGCGTGCTGGAGCTTT
CCAGGGGGCCAAGGACCTGCGCTGGCTCTACCTGTCAGAAAATGCCCTCAGTTCCCTGCAGCCTGGTTCC
CTGGATGATGTGGAGAACCTAGCCAAGTTCCACCTGGACAAGAACCAGCTGTCTAGCTACCCCTCAGCCG
CCCTGAGCAAACTTCGGGTGGTGGAGGAGCTGAAGCTGTCTCACAACCCTCTGAAGAGCATCCCAGACAA
TGCCTTCCAGTCCTTCGGTAGATATCTGGAGACCCTCTGGCTGGATAACACCAACCTGGAGAAGTTCTCA
GATGCTGCCTTCTCGGGTGTGACCACACTGAAACACGTCCATCTGGACAACAACCGCCTGAACCAACTGC
CTTCCTCCTTCCCCTTTGACAACCTGGAGACCCTCACTCTCACCAACAACCCATGGAAATGCACCTGCCA
GCTCCGTGGCCTTCGGCGGTGGTTGGAAGCCAAGGCTTCTCGACCGGATGCTACCTGCTCCTCGCCAGCC
AAGTTCAAGGGTCAGCGGATTCGTGACACAGATGCCCTTCGCAGCTGCAAATCCCCGACCAAGAGGTCCA
AGAAAGCTGGCCGCCATTAAACAGGTCCTGATCCAGCCAGTCCTGGCGACTGCCTTCCGCTGGAGAGACT
ACTGACGTTCCCTCCCATCATCCACACCTTCTCCTACAGCCTCTGCGGATGCACAGCGCTGCCCCGCCCC
CGCCCCCACCTAGGTACATCCTGGCAGGGGCACTGGGCTCTCTATCACCATCCCAGCTCCACCCAGTGGG
GTCCTAGGAAAGACACAGAATCCCTCCCCAGCCACTGTGTCTGGGCTCTGCCATGGCTCCTTTGAGAGAA
GCTATTGTAGAACCTCCTACCCTCTGTCCATCGGAGCTAAAGCGCAGTGGTCATTGGGATGACCACGTTA
TTACCACCTTCCTCGGTTCCCTCTGTCCCTGCCATTTGGAAACAAACATCAGGCCCCTGACCCACCCTGA
TTGCCAGAAAGAATTTCAGGCCCATGCCCCAACTCTGCCAGTTCCTGCCTGCCAGGACATGCTACCAGGA
TACCAGTAGCGCTTGGCTGCATATCCTTCCTGTTTGCGCTCCAGATTTCTATAAACATAAATGTATGTGT
GTTCAACATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4192855 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4192855 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006850 same experiment
 EMAGE:31480 same embryo
 EMAGE:29506 same embryo
 EMAGE:31366 same embryo
 EMAGE:31155 same embryo
 EMAGE:31159 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS