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EMAGE:31837

Atp6v1b1 ATPase, H+ transporting, lysosomal V1 subunit B1 ( MGI:103285)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31837 EMAGE:31837 EMAGE:31837 EMAGE:31837 EMAGE:31837
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14 15 16
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4562
Entity Detected:Atp6v1b1, ATPase, H+ transporting, lysosomal V1 subunit B1 ( MGI:103285)
Sequence:sense strand is shown

>T4562
AGAGCTACCACCAGGCTTCTCAGGCACTAGCTCCCAGCTCTCCACACGCCATGGCCACAACAGTAGACAG
CAGGTCCTCGGGATTCACTGGCAATAGCTGTGACCCAGGCACAGCCCAAGAGCATGTGCAGGCTGTGACC
CGAAACTACATCACCCACCCCCGAGTCACCTATAGGACAGTGTGCAGCGTCAATGGGCCTCTGGTGGTGC
TGGACCAGGTCAAGGTAAGACGCTTCAGTCTCTCTCCTGGCTCCCAGGCTATACCCAGGATTTCTTTTAA
GAATTAAGACCTTGTCTTAATTCTTTTGAATTCTGTCGCTCCTCGAATAGCCTGCAAAGTTTCTTCTTGT
CTGTGGGAGGCTGTAAAAACCATAAGCACGCAGGGCCCAGGGCTGGGGAGGTGGGGGCCAGGGCGAGTGC
TGGCCCTGGGAATCCGGTTTTACCCAGGCTGGCCCTCCTTTGTCTCTTGGTCTCTCCCTCTACCCCACAC
GACCCTGGAGCTAGAGATCAAACCCAGGGCCTTATGCACCACGCCAGGCAAGCACTGAATCCTGAGCTGC
AGTTCTCTGTCTGATTTTGTTAAGCCAGTTTATTGCCTGGTTTCTTTTAGACCCGAGTTGGTATTCTCTG
TTGAATTTTTCCTCTTTAGGCAGACAGTCAGATCTCTCCAGTGAGAGGAAAAACACTGGGGACAAGGGTG
GTTTCTGATAAGACCCCCGGCTCACACGGAAGGGAGCAGAGAAGGAAAGAGTGGAACTTTTGCTGTAGCA
CTCATTTCCTCTGTCTCTCTGCTCTTGGTCGCCCTCTTGTGGTTGAGATTACCACTTCGGAGAAATTAGG
GTTGGGAAGGGCCACAACCCCTCACCGAAGGAGAAAAGGACAAACAAAACCACCTTCAGTGACAGTCATC
GCTGAAAATCTAAGAAGGGAAACCTTGGGAGAGTGGCTCCACCCTGGTTACTAGTCTATCCACCTCTCCC
AAGACCCGTAAGGTCACTAGCGTGTGACCTTATAAGAGGACAGAATGACAGCCACGACGACGATGATAAC
TTCTGGCACTAAAACATGTCACCAAGTGTTATTATATTTTAATAGCAAAAATAAAGCATGCTCCTTGTAC
CTCGAGAAACAAAGGAAAGACTGTTAATTGCCTGATCCGTTGTCTCCAGCCCTGTGAAACCTGGAGCTCA
TATACAGGTGAACAGTGCAGGTGTGGAGAGACACCTGTACCTCTGTTGGACGGTGACCCAGCAGGCTGGG
TTTCTTGGTATACTGATATTTGTGGGGCTTAACCTTCTATGTCAACTAGATTTTAGGATCACCTAAGAGA
CGTGCAATTTGGGCATGTGTGTAAGAGCTTTTCCAGAGCAGTTTAATTAAGAATGGAAGACTTGCCCAGA
ATGTGAGTGGCAACATCCCCTAAGGTGGGGTCCCGAGCTGAATAAAAAGGGGAAGGGGAACAGAAGCTGA
GCACCAGAACTCATCTCTCCTTGTGACCCATCACCTCAAGTTCTGCCCAAGCCTTTCCCACCATGGGGAG
CTGAATCCTCTCAGACCATGAGCCAAGACAAAGACTTCTCTAAGTCGCATTTGTCAGGCAAAGAAAAAAA
AAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4980313 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4980313 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_001959 same experiment
 EMAGE:31507 same embryo
 EMAGE:31826 same embryo
 EMAGE:30603 same embryo
 EMAGE:31763 same embryo
 EMAGE:30599 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS