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EMAGE:32104

Cldn8 claudin 8 ( MGI:1859286)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:32104 EMAGE:32104 EMAGE:32104 EMAGE:32104 EMAGE:32104
euxassay_002191_01 euxassay_002191_02 euxassay_002191_03 euxassay_002191_04 euxassay_002191_05
EMAGE:32104 EMAGE:32104 EMAGE:32104 EMAGE:32104 EMAGE:32104
euxassay_002191_06 euxassay_002191_07 euxassay_002191_08 euxassay_002191_09 euxassay_002191_10
EMAGE:32104 EMAGE:32104 EMAGE:32104 EMAGE:32104 EMAGE:32104
euxassay_002191_11 euxassay_002191_12 euxassay_002191_13 euxassay_002191_14 euxassay_002191_15
EMAGE:32104 EMAGE:32104 EMAGE:32104 EMAGE:32104 EMAGE:32104
euxassay_002191_16 euxassay_002191_17 euxassay_002191_18 euxassay_002191_19 euxassay_002191_20
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euxassay_002191_21 euxassay_002191_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
submandibular gland primordium
strong strong
regionalstrong expression: see section 06 07 08 09 10 15 16 17 18
oral epithelium
moderate moderate
regionalmoderate expression: see section 08 09 10 11 12 13 14 15 weak expression: see section 06 07 16 17 18
trachea
moderate moderate
regionalmoderate expression: see section 11 12
kidney pelvis
strong strong
regionalstrong expression: see section 07 15 16
nasal cavity olfactory epithelium
strong strong
regionalstrong expression: see section 09 10 11 12 13 14 15 16 17 18
hindgut
strong strong
regionalstrong expression: see section 11 12 13
foregut-midgut junction
strong strong
regionalstrong expression: see section 13 14 15
kidney calyx
strong strong
regionalstrong expression: see section 05 06 08 09 14 15 17 18
rectum
strong strong
regionalstrong expression: see section 13 14 15
midgut
strong strong
regionalstrong expression: see section 10 11 12 13 14 15 16 17 18 19 20 21 22
bladder
strong strong
regionalstrong expression: see section 13 moderate expression: see section 14 15
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6048
Entity Detected:Cldn8, claudin 8 ( MGI:1859286)
Sequence:sense strand is shown

>T6048
GGAGAACTGTTCCCTCCCTCCCAAGGCGTACAGATTTCTGCTTGAAAGGAAGCCCTACCTCCCGGGTCAG
CGTTCCAGCTGGATACAATTTGGGAGGACGATGGCAACCTACGCTCTTCAAATGGCTGCACTGGTGCTTG
GTGGTGTTGGCATGGTGGGCACGGTGGCTGTGACTATCATGCCTCAGTGGAGAGTGTCTGCCTTCATCGA
AAGTAACATTGTGGTGTTTGAGAACCGCTGGGAAGGCTTGTGGATGAATTGTATGAGGCATGCCAACATC
AGAATGCAGTGCAAGGTCTACGACTCCCTGCTGGCTCTTAGTCCAGACCTCCAGGCATCCCGAGGACTGA
TGTGTGCTGCGTCCGTCTTGGCTTTCTTGGCTTTCATGACAGCCATCCTCGGAATGAAGTGCACCAGATG
CACGGGGGACGATGAGAACGTGAAGAGCCGCATCTTGCTGACAGCCGGAATCATCTTCTTCATCACCGGC
TTGGTTGTGCTCATCCCTGTCAGCTGGGTTGCCAATTCCATCATCAGAGACTTCTACAACCCACTGGTGG
ATGTGGCCCTAAAGCGTGAGCTGGGAGAAGCCCTCTACATAGGCTGGACCACAGCGCTGGTGCTGATCGC
TGGAGGAGCACTGTTCTGTTGTGTGTTTTGTTGTACTGAAAGGAGCAACAGTTACAGGTACTCGGTACCA
TCCCATCGCACCACTCAACGGAGTTTCCACGCCGAAAAGAGATCTCCGAGCATATACTCCAAAAGTCAGT
ATGTGTAGTTGTGTGTGTATATTTTAGCCGTAGCTAAGCTTTTATAAATCACCAAACCAGCCACTATTTT
AGAGAAATGGAGCCCACACTGTATCCATTTACCTTTCTTAACTGCCTAGCACTCATTAGAGGAAATATGC
AGCGTCTATGTTTCCATAAGTGATTTTAGCAGAATGAGGTATTATGTGCACTGCTTCGATTGTTCTAGAA
AGCCTAGCCATTTGTTTTCTAAAATGGTTCACTCAGCTCTTCCTTTTTATCAGTCACTCTAAACCTGCAC
ATCGAAAGACTGTTGGCTTAAGCTGTGATTTCTCTGTGTCATGACATTATCCAAGTAGATGCGGGTGGCA
GTTATATCTCACACATATAGAGACAGGCTTATGTGGTTCTATTTAAAGTGGAATGCCAATCCATCACGCT
GAATAAATAGAACTCAGCTATTGCATTTCAGGGGGCCTGGGGATAAAAGAGAAGGAGGCTGATATTAATT
GCCTAAAAACAGCTTAAGGATTAGTGCACTCTATTTGTAGTGAAGGTTAAAATGAAGGCTTTAATCATTA
GTGTAAGGCTTTCTGCTATCCTGCTTTGCAGCCTCGAGGAGTAAGAAATTCTGTCACCTTTATCCTTTCC
CTCTACACGCCTTAATTTTCTGTTGCCTACTATCTCTTAAAGTTTAAAGCAGATGTTTTGGCAAAATATT
TTTTTTCCTTTAGACTACTTTTGTAAGGCTAAGCAGTGGTCTTAGAAAAATTAATGATTTCAGAAAAATG
AAATCATTAGCTTTTCTGTTTAGAGAAGAATGTATTGTTTTTGAAATGAAGTCATTTCATGTAAGGGATT
GTTCAAATGCTATTTTTGCATAGTTTTTTCTTTCTTTTTTTTAGGAACTTATCAGTATATATGAGGGAGA
AAGAAGGACATTTTCATTGTCATTTTATTAACCCAAAGAGAGACACAAACCCTCCAAATCCAAAAGCTTG
TCCCCTTCTAACTCCTGACACTCAAACTTATCATTTCTCTTCTGTTGAAGGGATTTCCCCATTTTCTATG
CCTTTGCTAAGTTCTATTGAAGTGTAGTATCACTCTGTGTTTCCTCCTAATTTGAGACAACTGTTATTCT
AAGTTTCATATATATGACTTTTATATTGATAAATTGTATCTCATAACAATATAGCATCTCTTACATCTTC
ATTCTTTTTCTTTACCTTGTGCAAGTGTTTAAAACTTGGTATTGACTCTTTTAGTTTGAACATAGATATT
GTGTCCACTTTTGTAATGTATGATTTAAAATCCACGTACTTTATAATGACCTCACATATGCACTAATATT
TGATTAATATATGAATAATATTAAATTGCACTTAGGTCCAATGAAATGTGTTTGTTGTAAATACTGTGTA
TGTAATCATGTTTTAAAAGATGTTGTCCATATGTATTTCAACTCCTGAGAATTCATATGAACTAAGAGCA
GTGCTGAATGACTTGGAAATATACATCATATTTATGTGAAGGATATTATTAAACGTTTGCAATACTAAAA
AAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3490218 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3490218 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_002191 same experiment
 EMAGE:29869 same embryo
 EMAGE:29861 same embryo
 EMAGE:32112 same embryo
 EMAGE:29867 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS