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EMAGE:32223

Slk ( MGI:103241)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:32223 EMAGE:32223 EMAGE:32223 EMAGE:32223 EMAGE:32223
euxassay_012162_01 euxassay_012162_02 euxassay_012162_03 euxassay_012162_04 euxassay_012162_05
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euxassay_012162_06 euxassay_012162_07 euxassay_012162_08 euxassay_012162_09 euxassay_012162_10
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euxassay_012162_11 euxassay_012162_12 euxassay_012162_13 euxassay_012162_14 euxassay_012162_15
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euxassay_012162_16 euxassay_012162_17 euxassay_012162_18 euxassay_012162_19 euxassay_012162_20
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euxassay_012162_21 euxassay_012162_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
esophagus
moderate moderate
regionalmoderate expression: see section 10
facial vii ganglion
moderate moderate
regionalmoderate expression: see section 03 04 17 18
lower jaw molar
moderate moderate
regionalmoderate expression: see section 04 17
oral epithelium
moderate moderate
regionalmoderate expression: see section 05 06 16 17
upper jaw molar
moderate moderate
regionalmoderate expression: see section 04 17
thymus primordium
moderate moderate
regionalmoderate expression: see section 09 10 12 weak expression: see section 11 13
stomach
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 07
rectum
moderate moderate
regionalmoderate expression: see section 12
midgut
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14 15
thyroid gland
weak weak
regionalweak expression: see section 09 13
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T37058
Entity Detected:Slk, ( MGI:103241)
Sequence:sense strand is shown

>T37058
TGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGC
TCAGTGTCTCTGCAGGAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATG
GTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTT
TCTCAGGCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTC
AATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTGAGTAAGAAGC
GACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGA
GCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTC
CAGAATGTGCTGAAAAACCGCAAGAAGGAGGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGA
GGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAGGAACAAGAATTTGTTCA
GAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAAT
ATTGA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 98639. Forward Primer - name:098639_F_cDNA_Slk, sequence:TGTGGAGAATAGCAGTGGTGAC; Reverse Primer - name:098639_N_SP6_cDNA_Slk, sequence:TCAATATTGGCCAACTCTGC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_012162 same experiment
 EMAGE:31913 same embryo
 EMAGE:32220 same embryo
 EMAGE:32221 same embryo
 EMAGE:31917 same embryo
 EMAGE:30784 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS