EMAGE mouse gene expression spatial database

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EMAGE:7009

Kifc1 kinesin family member C1 ( MGI:109596)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002566. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002566_01	euxassay_002566_02	euxassay_002566_03	euxassay_002566_04

euxassay_002566_05	euxassay_002566_06	euxassay_002566_07	euxassay_002566_08	euxassay_002566_09

euxassay_002566_10	euxassay_002566_11	euxassay_002566_12	euxassay_002566_13	euxassay_002566_14

euxassay_002566_15	euxassay_002566_16	euxassay_002566_17	euxassay_002566_18	euxassay_002566_19

euxassay_002566_20	euxassay_002566_21	euxassay_002566_22	euxassay_002566_23	euxassay_002566_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7009_wholemount_strong.wlz

7009_wholemount_moderate.wlz

7009_wholemount_weak.wlz

7009_wholemount_possible.wlz

7009_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7009_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

olfactory cortex ventricular layer

moderate

homogeneous

moderate expression: see section 10 11 12 16 17 18

telencephalon ventricular layer

moderate

homogeneous

moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 15 16 17 18 19 20 21 22 23 24

midbrain ventricular layer

moderate

regional

moderate expression: see section 10 11 12 13 14 15 16 17 18

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5184
Entity Detected:	Kifc1, kinesin family member C1 ( MGI:109596)
Sequence:	sense strand is shown >T5184 GGCGCGAGCCCTTGAGAGGACGCGGGTCTCATCGTCCTGCCTGCTGCCTTTGCACCCTTTCTGTGCGGAC CACTATGGACGTGCAGGCGCAGAGGCCACCTTTGTTGGAAGTGAAGAGGAACGTAGAACTGAAGGCAGCC CTGGTGAAGTCCTCCTCCCGAGTGCCCCTGTCAGCAAGCAGGCTCAAGAGGGGTCCTGACCAGATGGAGG ATGCCTTGGAGCCTGCAAAGAAACGGACACGAGTCATGGGTGCAGTGACCAAAGTTGACACATCCCGTCC CAGAGGACCACTCCTCAGCACAGTGTCACAGACCCAGGGCCACACTGCAGCTCAGAAAGGCCCTAAGAAG ACAGGACCTCGTGGGTGCTCTGCTGTTGGTACAGTGCTGAGGAGCCAGAAGCCAGCTCCCGCTGCTCCTG CCCAGAAGCCTGGCACATCCACTGCTCCTGTGGTGGTAGGGAAGAGAGCTGGCAAACGCCCTGCCTGGGA CCTGAAGGGCCAGTTGTGTGACCTCAATGAAGAGTTGAAACGCTATCGGGAGAAGACTCAAACGCTGGAA CTGGAGAACCGGGGGCTTCGGGAGCAACTCAGAGAGGTCCAGGAGCAGGCCACGACCCTGGGGACAGAGC GGAACACCCTGGAAGGGGAGCTGGCCAGTGTACGCAGCCGAGCTGAGCAGGACCAGCAGAGGCTGGAGAC GCTGAGTGCCCGTGTCTTGGAGCTGGAGGAATGTCTGGGTACCAGGGAAAGGCTGCTTCAGGAGCTTCAG GGAGAGCGGCTGCAATTGCAGGAGGAGCGGAGCACACTGAGCACCCAGCTGGAGGAGCAGGAGAGGAGGT TTCAGGCCACAGAAGCAGCTCTGTCAAGCAGCCAAGAAGAGGTGCTGTGTCTTCGGCAGAAGACTGAAGC CCAGGTGACCTTACTGGCTGAGCAAGGAGACCGGCTCTATGGGTTAGAGATGGAGCGGCGGCGACTCCAT AACCAGCTGCAGGAACTGAAGGGCAATATCCGGGTGTTCTGCCGCGTGCGCCCTGTCCTCGAAGGGGAAT CCACTCCATCTCCTGGCTTCCTCGTGTTTCCTCCTGGCCCTGCCGGACCCTCTGATCCCCCGACGGGCCT TAGCCTCTCACGATCTGATGATCGGCGCTCCACCCTGACTGGGGCCCCGGCCCCCACTGTCCGCCATGAT TTCTCCTTTGATCGGGTGTTCCCGCCGGGAAGCAAGCAGGAGGAAGTGTTTGAGGAGATCGCCATGCTTG TCCAGTCAGCACTGGATGGCTACCCTGTGTGCATTTTTGCCTATGGACAGACAGGCAGTGGCAAGACCTT CACTATGGAAGGAGGGCCTAGGGGAGACCCCCAATTGGAAGGGCTGATCCCTCGGGCCATGCGGCATCTG TTCTCTGTGGCCCAGGAGATGAGCGGCCAGGGCTGGACATACAGTTTTGTGGCGAGTTACGTAGAGATCT ACAATGAGACCGTTCGAGACCTGCTAGCTACTGGGCCCCGCAAGGGACAAGGGGGCGAGTGTGAGATCCG TCGGGCAAGCCCAGGGAGTGAGGAGCTTACTGTCACCAATGCCCGCTATGTCCCTGTTTCCTGTGAGAAA GAGGTGGAGGCCCTGCTCCATTTGGCTCATCAGAACCGGGCTGTGGCCCACACTGCCCAAAATAAGAGAT CATCACGCAGTCATAGTGTGTTCCAGCTGCAGATTTCTGGAGAGCATGCAGCTCGGGGCCTGCAGTGTGG CGCTCCGCTCAACCTTGTGGACCTAGCTGGGAGTGAGCGGCTAGACCCTGGCTTACACCTAGGCCCTGGG GAGCGTGATCGTCTTCGGGAGACACAGGCCATTAACAGCAGTCTGTCTACACTGGGACTGGTCATAATGG CCCTGAGCAATAAGGAGTCCCACGTGCCTTACCGAAACAGCAAGCTCACCTACTTGCTGCAGAACTCTCT GGGTGGCAGTGCCAAGATGCTTATGTTTGTGAATATTTCTCCTCTGGAAGAGAATGTCTCCGAGTCTCTG AATTCACTACGCTTTGCTTCCAAGGTGAACCAGTGTGTCATTGGTACTGCTCAGGCTAATAAGAAGTGAA GTCGGATCCAGAGCCTGATTCCCTTGCAAGCCAGTACGCATGCGTCTCTGTTTTAGTGTGTATTCGGTGG GGGTGGGTGGGAGTTGAGACATGATTTTATTGGGTGAACAATATTTATTATGTAATCAACTATAAATAAA GAATAATCTGTTGGTTAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5350661 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5350661 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7010 same embryo
	EMAGE:7006 same embryo
	EMAGE:7007 same embryo
	EMAGE:7008 same embryo
	EMAGE:7011 same embryo
	EurExpress:euxassay_002566 same experiment
	MGI:4825773 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source