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EMAGE:7039

Pddc1 Parkinson disease 7 domain containing 1 ( MGI:2387178)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039
"Pseudo-wholemount" of euxassay_002480. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002480_01 euxassay_002480_02 euxassay_002480_03 euxassay_002480_04
EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039
euxassay_002480_05 euxassay_002480_06 euxassay_002480_07 euxassay_002480_08 euxassay_002480_09
EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039
euxassay_002480_10 euxassay_002480_11 euxassay_002480_12 euxassay_002480_13 euxassay_002480_14
EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039
euxassay_002480_15 euxassay_002480_16 euxassay_002480_17 euxassay_002480_18 euxassay_002480_19
EMAGE:7039 EMAGE:7039 EMAGE:7039 EMAGE:7039
euxassay_002480_20 euxassay_002480_21 euxassay_002480_22 euxassay_002480_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7039Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7039_wholemount_strong.wlz
7039_wholemount_moderate.wlz
7039_wholemount_weak.wlz
7039_wholemount_possible.wlz
7039_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7039_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5155
Entity Detected:Pddc1, Parkinson disease 7 domain containing 1 ( MGI:2387178)
Sequence:sense strand is shown

>T5155
CCACGCGTCCGATCCGCCTGGGCTGTAGCCATGGCGTCCGAGCGGCTGCCAAGCAGGCCTGCGTGTCTCC
TGGTGGCCAGCGGCGCTTCCGAAGGTGTGTCAGCCCAGTCCTTCGTCCACTGTTTCACACTGGCCAGTGC
TGCCTTCAACCTACAGGTGGCCACCCCAGGGGGAAAGGCCATTGACTTTGTGGATGTGACTGAGAGCAAT
GCCCGATGGGTACAAGACTTCCGCCTCAAGGCATACGCCAGTCCTGCTAAGCTTGAGTCCATAGATGGTG
CCCGGTACCATGCCCTCCTGATTCCCAGCTGTCCTGGCGCCCTGACAGATCTTGCCAGCAGTGGGTCCCT
GGCTCGAATACTGCAGCACTTCCGCTCTGAGAGCAAACCCATCTGCGCCATTGGCCATGGTGTTGCTGCC
CTGTGCTGTGCTACCAATGAAGATAGGTCCTGGGTGTTCCAGGGCTACAGTCTGACAGGGCCTTCAGTGT
ACGAGCTCATCAGAGCACCTGGCTTTGCCCGCCTACCATTGATCGTTGAGGACTTTGTGAAGGACTCTGG
TGCTGGCTTCAGTGCCAGTGAGCCCGACGCTGTGCACGTGGTGCTGGACCGCCATCTGGTCACTGGCCAG
AACGCTAACTCCACAGTTCCTGCTGTCCAGAACCTGCTCTTCCTCTGCGGCAGCCGGAAGTAAGCTTGGA
TGCAGTCCTGGTGGCCTAGAGACAAGGACTGAACTCACCATGGTCTCCTGTACTGACACTCGATGGGACA
CTCAAGCCTCCATCAGGACCTTGTGGAATGCTGGAAGCCTCCAGGGATTAATACTTGTGGACTGTCAGTC
CTAATGTAGACTAGGCACCCTTTCCTCCATCCCAGCACAGTGTCTTGGCTGGCCAGGCAGTCCCTGAGAA
CTCCAGATTGACGATTCCAAGAAGAATTGCCCACGGGATGTAGTCAGCTGTGGGGTCTCAGGATGGGGCG
TTACTCTTCTGTGGGCTTTCGGCTATTTCTGTCCCTTCCACTGTTCATGGGAATCGTGTGGATGGACCAC
AGGCTGGAGCTTGCTATGAACTTCCTTTCTCGTCTTTCCTTTTTTTTTTTTTTTTTTAAAAAACTTGTTT
ATTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5345186 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5345186 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7041 same embryo
 EMAGE:7038 same embryo
 EMAGE:7040 same embryo
 EMAGE:7037 same embryo
 EMAGE:7036 same embryo
 EurExpress:euxassay_002480 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS