EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:7108

Loh12cr1 loss of heterozygosity, 12, chromosomal region 1 homolog (human) ( MGI:1915024)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002602. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002602_01	euxassay_002602_02	euxassay_002602_03	euxassay_002602_04

euxassay_002602_05	euxassay_002602_06	euxassay_002602_07	euxassay_002602_08	euxassay_002602_09

euxassay_002602_10	euxassay_002602_11	euxassay_002602_12	euxassay_002602_13	euxassay_002602_14

euxassay_002602_15	euxassay_002602_16	euxassay_002602_17	euxassay_002602_18	euxassay_002602_19

euxassay_002602_20	euxassay_002602_21	euxassay_002602_22	euxassay_002602_23	euxassay_002602_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7108_wholemount_strong.wlz

7108_wholemount_moderate.wlz

7108_wholemount_weak.wlz

7108_wholemount_possible.wlz

7108_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7108_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5220
Entity Detected:	Loh12cr1, loss of heterozygosity, 12, chromosomal region 1 homolog (human) ( MGI:1915024)
Sequence:	sense strand is shown >T5220 GGCCAATCGGCGTCCCGGAAGGAGCGAGCTGAAGCCACCGAGCCAGTGAATGACAGCAGCGCCGCCCGCT GGTCGCGGCTGCAGCCCTGCCGGCGTCCCGAGCCTCCTGTCAACGCGAGCGGCGTGCTTTCCAGCGGCGC CTCTCCAAGTGTCTGTGGCCCAGCGGGGTCTCCCCGCTCTCCCTAGCCTCTGCCCCGGTGTCCCTCCGCT TCAGGGGCCATGGGCAGCGAGCAGAGCGCGGAGGCCGAGAGCCGCCCCGGCGATCTGAACGCCTCAGTGA CTCCATCTCCGGCTAAACATCGGGCCAAGATGGACGATATCGTGGTGGTAGCTCAGGGCTCTCAGGCCTC ACGGAATGTCAGCAATGACCCCGATGTCATCAAGCTACAAGAGATTCCAACCTTCCAGCCCCTTTTAAAA GGGCTCTTGAGTGGACAGACTTCCCCAACCAATGCCAAACTGGAGAAGCTAGACTCTCAGCAGGTGCTGC AGCTCTGCCTCCGGTACCAGGATCACCTGCACCAGTGCGCAGAGGCAGTGGCTTTCGATCAGAATGCTCT AGTCAAGCGAATCAAAGAGATGGATCTGTCCGTGGAAACCCTCTTTTGCTTCATGCAGGAGCGCCAGAAA AGATACGCCAAGTATGCAGAGCAGATCCAGAAGGTGAATGAGATGTCGGCCATCCTGCGCCGCATCCAGA TGGGCATAGACCAGACGGTGCCACTGATGGAGCGGCTGAACAGCATGCTGCCAGAGGCTGAGCGCCTGGA GCCCTTCAGCATGAAGCCTGAGCGGGAGCGGCACTAGCAGGCGCCTGCCTGCGCACACAGCTCCTCCAGC CTTCCCCTGGGCCCTGACGTTTGCCTAGATGTGTCTGACCCACATGGACTTCCCAGTGTGGTAGTTCTTG AGAACCGAAGTTGGGACAGTTGAATTTCCAGAAATCCTGTAAAGAACTTTGCATCAAGAGTTATTTTTAT TTTGCCCCGATTGTTTGAATTAAAAGTGTAAGTAGTCTAGCTACTGCAGTGAAACTGTGGAGAAAATGCT AAGGACCTGTTCTCTTTGGCGCCTCGTGAGACTTGACGCAGGCTCTCTGATCTGTGGCTGTAAACATAAG TGCTGACTGGCTCCAGCAACTGTTGCTATGCATTGGCCCCCATCACATCAAGGAGGTATCTGGCACTGTC TTCCTGCCCTGCCAGAACACCATCTTTTTGTTTTTCCGGTACCACGCCCCATTTGTGGGTCACTGGAAAC TGAAGACTGCCGTCATGCACTCATGAAGGTGTTTCCCATTAGAACCGCTTTTCCATTCAGAGCGCAGGCT TCTGCCAGCCTGGCAGACCTTGGCTTCCATAACAAGGTTTGCACTGACACTTGCTCCCACCCTCTCTCAT GCGAGACCCTTGGCCCTCCACTGATGTGCCAGGAACACTAAAGAGGCGACGGAGCCTCTGCCCGCCCTGC CGACTGTAGGGCGTGAAGCTGGGGAAAGAGCTGTTGTGGAAGGAAGAGACGCAATAAGTGCAGGGGACGG GCCTGAAGATAAGAGCTGGGTCTGAGGGGCTGTCAGGGCTGGGAGTCTACAGCCTCCCCTTCGTCCCTGT GTTCCTCCAGAATCCAGAGAGATTCTGTCAGGTGTTAGAAGAGCCTCAGTGTTTTTATAAGATTAAAATG AATCTGATTAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5355560 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5355560 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7107 same embryo
	EMAGE:7104 same embryo
	EMAGE:7105 same embryo
	EMAGE:7103 same embryo
	EMAGE:7106 same embryo
	EurExpress:euxassay_002602 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source