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EMAGE:7593

BC051070 cDNA sequence BC051070 ( MGI:2682303)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7593
euxassay_004642_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7593Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7593_wholemount_strong.wlz
7593_wholemount_moderate.wlz
7593_wholemount_weak.wlz
7593_wholemount_possible.wlz
7593_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7593_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7711
Entity Detected:BC051070, cDNA sequence BC051070 ( MGI:2682303)
Sequence:sense strand is shown

>T7711
CTTTGTGTAACTGTGGACTTCACCTCCTGCTAGGAGGAACAGCATTAAAAGCAGAGTCTGTAATAAAGAG
CTGCTGGTTTACAATTCAGTCATATATACATTGCAATAAGTAATTTCTATGAGAAAACCCTTGTGATTAC
TAGGTACAGAAATGTTCTATAAAGGCAATGAAGACCCTCCTGGATCAGTGCTGAAGGCAACCATATCCAA
GTTAGTTTTCATCATGGGTCTCAACCTCCTTCTGAATGCTCAAATGGGCTCTGCCTACCAGCTGATGTGT
TACTTCAACAACTGGCCTCAGCATCAGCCAGATGTGAGAGATATAAAGCATGAAGACATTGACCCTTGCC
TCTGTACTCACCTAATCTATTCTTTTGCTGGGATTTGGGAAAATAACTTCACCATGACCAAAAGGAAAGA
ATTGGATGACTACAAAGGTTTTAATGACTTAAAAAAGAGAAACAACAAGCTGAAAACACTCCTGTCTATT
GGTTGCTGGAACTTCGGAGATGGCTCTTTTATCACCATGGTGTCCACTCCTGAGAACCGCCATTCTTTCA
TTACTTCAATCATAAAGTTCCTGCGGAAGTATGGATTTGATGGACTTAATTTGGCTTGGCAGTACCCTGG
CTGTTATGGAAGCCCTCCTAGGGACAAACATCTCTTTACTATCCTGATGCATGAAATACGTAAAGCTTTT
GAAAAAGAGGTGAGCAAGAACAAAAAGCCCAGGCTGATGGTTACTGCTGCAGTTGCTGGTGTTATCTCTA
CAATCCAATTTGGCTATGAGATCCCCCAACTGTCACAGTCCTTGGACTATATTCAAGTCATGACCTATGA
TCTCCATGGATCTTGGGATGGCTACACCGGAGAAAACAGTCCTCTCTATAAATCTCCAATTGAAACTGGA
GTAAAGGCCTTTCACAACATAAAATACATTATGGACAACTGGAAGAAAAAAGGGGCTTCCCCTGAGAAGC
TCATTGTTGGATTTCCAGCATATGGACACACCTTCATCCTAAGTGACTCCACTAAAACAGAAATTGGTGC
CCCTAGCAATCGTGGTGGCCATCCAGGACCCCACACAAAGCAAACTGGATTCTGGGCCTATTATGAGATT
TGCACATTCCTGAAAAATGGAGCCATTCAGGTCTGGAATGCTGCTCAGCAAGTGCCCTATGCCTTCCATG
GCAATGAGTGGGTTGGCTATGACAATATCAAGAGCTTTCATATCAAGGCTCAGTGGCTTAAGCGGAACAA
CTATGGAGGTGCCATGATTTGGACCATTGATATGGATGACTACACTGGTTCTTTCTGTGGTCAGGGCACA
TTTCCCCTGACTTCCATCTTGAAGAAAACCCTCAAAGTGCACAGTGCAAGTTGCAATGTAACTGTCCTTT
CAGCCAATGTGACTGTTAGCAGGAATAGCAGCTCTGGGGCATTGGAGCCTGTGTTGCAACTCAGTAGCAA
ATAACAGACGTAGCATCTGGCAGAGCCTGAAGGGAATCCCATTCCAGAACGGCCAGGAAGAATCTGTCTT
CAAGAGCAGCCAACTTTGCAGACCTAGACAAGGACATAATCTGCTACATTTCTCCTGGGGCTCTGCATGG
TGTCTCTTGACACTTTCTAGGACCATCTTACTTCTACTAATAAAATAAGCAGTCAGAAAAAAAAAAAAAA
AAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6308125 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6308125 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7594 same embryo
 EMAGE:7589 same embryo
 EMAGE:7592 same embryo
 EMAGE:7591 same embryo
 EMAGE:7590 same embryo
 EurExpress:euxassay_004642 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS