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EMAGE:7977

D130009I18Rik RIKEN cDNA D130009I18 gene ( MGI:2443663)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977
"Pseudo-wholemount" of euxassay_016029. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_016029_01 euxassay_016029_02 euxassay_016029_03 euxassay_016029_04
EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977
euxassay_016029_05 euxassay_016029_06 euxassay_016029_07 euxassay_016029_08 euxassay_016029_09
EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977
euxassay_016029_10 euxassay_016029_11 euxassay_016029_12 euxassay_016029_13 euxassay_016029_14
EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977
euxassay_016029_15 euxassay_016029_16 euxassay_016029_17 euxassay_016029_18 euxassay_016029_19
EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977 EMAGE:7977
euxassay_016029_20 euxassay_016029_21 euxassay_016029_22 euxassay_016029_23 euxassay_016029_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7977Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7977_wholemount_strong.wlz
7977_wholemount_moderate.wlz
7977_wholemount_weak.wlz
7977_wholemount_possible.wlz
7977_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7977_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T39688
Entity Detected:D130009I18Rik, RIKEN cDNA D130009I18 gene ( MGI:2443663)
Sequence:sense strand is shown

>T39688
GACTGAGTCTGGGAGAAGAGGAAGCCCTGAGTGTGTTGTTGGCATAGGCACAACCATGTCAAGGAACCCA
GAGCCTTGGACCACAGTGGAATGGAAAATCTTCTCATTGGGAGACTCGGAGGCATGGCAAAGACGTTCCA
TGCTCCATCTGTGGGTGTCTACAACAGCTTTCTTCTCCCTGATATTTATGGCCTGAATACTGCTCTCCTA
CAGAGAATTCGCCTACCAAGATGAGCTAAACTGTTTTCTTGATGCAGCTCTATGCCAAAAACTCACCTCC
TTGTTTATCTGTATGTAATAACCCAGGCTGTATGCAACCACCTCGCCTCTCTGTTCAACTCTAGTGTATT
CATTTCAAGAGCTAAAGACAGCTTTCTCCTCCACACAGTCCAGCCTAGAACTGACTGATTCAAAGCCTCA
TGGATATGCATTTTGGGAGCACTCCAAGCTTTCCCAGTGTGCCAAGCCATATAAAGAGCTGTACAGGTCA
AGGGGATATGTGTCTTGGCCCTAAAGAACTTAAGCTTCTGTATAAGGTGGCATTTCCAAAGCAATGCTTA
CTCCATCCTGTAAGGAGCATGGGAATGCAGTCTTTGACCCACAGTGGCTTTTTTTTTCCTTCCTGTCAGT
GTAAAAGCCAGCAGAGTACAAAAGACTACATGTGCTTTAGCATTGTTTTCTCAATAATGTTGACCATGGT
AATCCCTTGAAAATATCTCAGTGACCCTCAGAAGTTCACAAATTATGCCTTAACAACAAGAGGACATCTA
AAATGTGATCCAAAGGCTGGGAAACATCTCTGTGATTAAACAGGTCACCCAAGTAAAGGGC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 84876. Forward Primer - name:084876_F_cDNA_D130009I18Rik, sequence:GACTGAGTCTGGGAGAAGAGGA; Reverse Primer - name:084876_N_SP6_cDNA_D130009I18Rik, sequence:GCCCTTTACTTGGGTGACCTG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7982 same embryo
 EMAGE:7979 same embryo
 EMAGE:7978 same embryo
 EMAGE:7981 same embryo
 EMAGE:7980 same embryo
 EurExpress:euxassay_016029 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS