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EMAGE:7981

F830004M19Rik RIKEN cDNA F830004M19 gene ( MGI:2443611)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981
"Pseudo-wholemount" of euxassay_016040. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_016040_01 euxassay_016040_02 euxassay_016040_03 euxassay_016040_04
EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981
euxassay_016040_05 euxassay_016040_06 euxassay_016040_07 euxassay_016040_08 euxassay_016040_09
EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981
euxassay_016040_10 euxassay_016040_11 euxassay_016040_12 euxassay_016040_13 euxassay_016040_14
EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981
euxassay_016040_15 euxassay_016040_16 euxassay_016040_17 euxassay_016040_18 euxassay_016040_19
EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981 EMAGE:7981
euxassay_016040_20 euxassay_016040_21 euxassay_016040_22 euxassay_016040_23 euxassay_016040_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7981Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7981_wholemount_strong.wlz
7981_wholemount_moderate.wlz
7981_wholemount_weak.wlz
7981_wholemount_possible.wlz
7981_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7981_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T39686
Entity Detected:F830004M19Rik, RIKEN cDNA F830004M19 gene ( MGI:2443611)
Sequence:sense strand is shown

>T39686
GGAGGAGAAAGGATCCAAGAATAAACTTAGGTCTGTGAATGTAGTTCAGTGGTAGAATGCATACAAGTTT
CACCCTTTGGTTCCCAGCACAGGAAGAAAGCAAAACAAGAGCCTTGATCCTGTATCTTAAATGTTTACGA
GTGGGGAATGGGAAGGTGGCTCAGTGGATAAAGCACGAGTTGCATAAGCTGGGAACCTGTAGTTTGAATC
CCCACAACCCACGTATAAGGTGGGCAGGCACAGAGACCACCTGTAACCCAGTGAGTACGCAGGAGGCAGA
GGCTGGGTTCCACACCATAGCCCAGCTGCCCTTGAGTTCATGTCCACCTCCAGCACTTCCTCCTAAGAGC
TGGGATTAAGGCAGATTGCAGGTGTGAGTTGCCGTACCCATTTTTTATTGTTTTCTAGTATGTGCATTTG
TGTCGTATAAATTTCCTTTTCAAGCTAGGCATGTTTGTCTATGTGTGTGATCCCGGCATAGGGGAGGCAG
AGGTGGAAGGATCACCAAGCTAAGGCTCACCTGGTGATCTTCTTAGTGGATTGTACTAGGTCAGTTGACT
GTGTTGAGACTGTTGGAAAGACCAGTGAGAGTAACATAAACATCCCTTTCAGGGCTGCTCCTGTCTGCCT
TGATAGTTCATGTTCTTTTTATTTAATTCAATGCATTCCTAAGAAACTTCCCCTGGGGGGCTGTGGTGCA
GCTCAGCAGCGGAACACTTAACTTACTTAGCAAGGCCAAGGC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 69472. Forward Primer - name:069472_F_cDNA_F830004M19Rik, sequence:GGAGGAGAAAGGATCCAAGAAT; Reverse Primer - name:069472_N_SP6_cDNA_F830004M19Rik, sequence:GCCTTGGCCTTGCTAAGTAAGTT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7982 same embryo
 EMAGE:7977 same embryo
 EMAGE:7979 same embryo
 EMAGE:7978 same embryo
 EMAGE:7980 same embryo
 EurExpress:euxassay_016040 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS