EMAGE mouse gene expression spatial database

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EMAGE:7979

D130060J02Rik RIKEN cDNA D130060J02 gene ( MGI:2443698)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_016030. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_016030_01	euxassay_016030_02	euxassay_016030_03	euxassay_016030_04

euxassay_016030_05	euxassay_016030_06	euxassay_016030_07	euxassay_016030_08	euxassay_016030_09

euxassay_016030_10	euxassay_016030_11	euxassay_016030_12	euxassay_016030_13	euxassay_016030_14

euxassay_016030_15	euxassay_016030_16	euxassay_016030_17	euxassay_016030_18	euxassay_016030_19

euxassay_016030_20	euxassay_016030_21	euxassay_016030_22	euxassay_016030_23	euxassay_016030_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7979_wholemount_strong.wlz

7979_wholemount_moderate.wlz

7979_wholemount_weak.wlz

7979_wholemount_possible.wlz

7979_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7979_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

diencephalon lateral wall mantle layer

weak

regional

weak expression: see section 10 11 12 14 15 16 17

midbrain ventricular layer

weak

regional

weak expression: see section 07 08 09 10 11 14 15 16 17

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T39689
Entity Detected:	D130060J02Rik, RIKEN cDNA D130060J02 gene ( MGI:2443698)
Sequence:	sense strand is shown >T39689 GCGTATCTCAGCTGGTTATTCCTGCTAAACTGTGTACTAAGAACTGCAAATACCAACTAATATGTTATAG TGATGTGGGAGAGTGGTCTGATTTGGGTGTTGGGAGTGAGTGGTACAAAGAAGACTCCATGGAATGAAGA CATAAGTACATAAGACATCAATAAGCCTCTACTCTCAGAGTCTGTGAGAATACTGGTAGGGACTGGAGAA TATAGGATGTTTCCTGGACATGATACCCTAGCACTTTAAAAGATCCTGGCCTTTCTCAGTTCACATCAGC GGACACAAACCATTTACATGCACAGAACAGGTAGATCCAACTCCAGTGGGTCCGATTTCAGCAGAACAGG AGGCCTAATTAGTTCCAGTTCAGATCACTCAGCATGCCTTTTTTGGTTTTTGGTTTTTTTCCTTCTGGAA CCACAGCGTGGCTGTCTTCATGCTGTAGTTAGATGTAAGAATGCAGACTGCTGCTGGATCTCTTTGCTGT GGTTCTACCACTCAGGCAGAGGAGTAGGACAACTCAGGTAATTTGGTTAAGAACCTTACCGTGCTTTCTG TTGGGAGCATGCAGAATAAAAGTCTTTATCAGTCTCAGGAAAGGCTTT
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 69497. Forward Primer - name:069497_F_cDNA_D130060J02Rik, sequence:GCGTATCTCAGCTGGTTATTCC; Reverse Primer - name:069497_N_SP6_cDNA_D130060J02Rik, sequence:AAAGCCTTTCCTGAGACTGAT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7982 same embryo
	EMAGE:7977 same embryo
	EMAGE:7978 same embryo
	EMAGE:7981 same embryo
	EMAGE:7980 same embryo
	EurExpress:euxassay_016030 same experiment
	MGI:4824192 same experiment
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source