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EMAGE:8879

Pnck pregnancy upregulated non-ubiquitously expressed CaM kinase ( MGI:1347357)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8879 EMAGE:8879 EMAGE:8879 EMAGE:8879 EMAGE:8879
"Pseudo-wholemount" of euxassay_010125. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010125_01 euxassay_010125_02 euxassay_010125_03 euxassay_010125_04
EMAGE:8879 EMAGE:8879 EMAGE:8879 EMAGE:8879 EMAGE:8879
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euxassay_010125_10 euxassay_010125_11 euxassay_010125_12 euxassay_010125_13 euxassay_010125_14
EMAGE:8879 EMAGE:8879 EMAGE:8879 EMAGE:8879 EMAGE:8879
euxassay_010125_15 euxassay_010125_16 euxassay_010125_17 euxassay_010125_18 euxassay_010125_19
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euxassay_010125_20 euxassay_010125_21 euxassay_010125_22 euxassay_010125_23 euxassay_010125_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8879Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8879_wholemount_strong.wlz
8879_wholemount_moderate.wlz
8879_wholemount_weak.wlz
8879_wholemount_possible.wlz
8879_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8879_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T32142
Entity Detected:Pnck, pregnancy upregulated non-ubiquitously expressed CaM kinase ( MGI:1347357)
Sequence:sense strand is shown

>T32142
CTCGGGTGCCTTCTCTGAGGTGATGCTGGCCCAGGAAAGGGGCTCTGCTCATCTTGTGGCCCTCAAGTGC
ATTCCCAAGAAAGCACTTCGGGGCAAGGAGGCCCTGGTGGAGAATGAGATCGCGGTACTTCGCAGAATCA
GCCATCCCAACATTGTGGCTCTGGAGGACGTCCATGAGAGTCCTTCTCATCTCTACTTGGCCATGGAGCT
GGTAACAGGTGGTGAACTGTTTGACCGCATCATGGAGCGGGGCTCCTACACAGAGAAGGACGCCAGCCAC
CTTGTAGGGCAGGTCCTTGGCGCTGTCTCCTACCTTCATAGCCTGGGCATCGTGCACCGGGACCTCAAGC
CTGAAAACCTCCTCTATGCCACACCTTTTGAGGACTCCAAGATCATGGTCTCTGACTTTGGCCTGTCCAA
AATACAAGCTGGCAACATGCTAGGCACAGCCTGTGGGACCCCAGGATATGTGGCCCCAGAGCTCCTGGAG
CAGAAACCCTACGGGAAGGCCGTAGATGTGTGGGCCCTGGGTGTCATCTCCTACATCCTGCTGTGTGGGT
ACCCCCCCTTCTATGATGAGAGCGATCCTGAACTCTTCAGCCAGATTCTGAGGGC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4208888), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 60251. Forward Primer - name:060251_F_IRAV95_h04_Pnck, sequence:CTCGGGTGCCTTCTCTGA; Reverse Primer - name:060251_R_SP6_IRAV95_h04_Pnck, sequence:GGCCCTCAGAATCTGGCT. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8883 same embryo
 EMAGE:8881 same embryo
 EMAGE:8882 same embryo
 EMAGE:8884 same embryo
 EMAGE:8880 same embryo
 EurExpress:euxassay_010125 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS