EMAGE mouse gene expression spatial database

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EMAGE:10712

Epb4.1l1 erythrocyte protein band 4.1-like 1 ( MGI:103010)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003221. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003221_01	euxassay_003221_02	euxassay_003221_03	euxassay_003221_04

euxassay_003221_05	euxassay_003221_06	euxassay_003221_07	euxassay_003221_08	euxassay_003221_09

euxassay_003221_10	euxassay_003221_11	euxassay_003221_12	euxassay_003221_13	euxassay_003221_14

euxassay_003221_15	euxassay_003221_16	euxassay_003221_17	euxassay_003221_18	euxassay_003221_19

euxassay_003221_20	euxassay_003221_21	euxassay_003221_22	euxassay_003221_23	euxassay_003221_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10712_wholemount_strong.wlz

10712_wholemount_moderate.wlz

10712_wholemount_weak.wlz

10712_wholemount_possible.wlz

10712_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10712_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

arm

moderate

regional

moderate expression: see section 01 02 03

hand mesenchyme

moderate

regional

moderate expression: see section 04 05 06

hindlimb digit 2 phalanx

moderate

regional

moderate expression: see section 04 05 07

hindlimb digit 3 phalanx

moderate

regional

moderate expression: see section 04 05

hindlimb digit 4 phalanx

moderate

regional

moderate expression: see section 05

foot mesenchyme

moderate

regional

moderate expression: see section 05 06 07

leg

moderate

regional

moderate expression: see section 01 02 03

head mesenchyme

moderate

regional

moderate expression: see section 02 03 04 21 22 23 24

vertebral axis musculature

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 16 18 19 20 21 22 23 24

adrenal cortex

moderate

regional

moderate expression: see section 08 09 10 11 17 18 19 20

dermis

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 17 18 19 20 21 22 23 24

hypothalamus mantle layer

moderate

regional

moderate expression: see section 09 10 11 12 13 14 15 16 17 18 19

diencephalon lateral wall mantle layer

moderate

regional

moderate expression: see section 08 09 10 11 12 13 14 15 16 17 18 19

telencephalon mantle layer

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

telencephalon marginal layer

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

medulla oblongata basal plate mantle layer

moderate

regional

moderate expression: see section 08 09 10 11 12 13 14 15 16 17 18 19

pons mantle layer

moderate

regional

moderate expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21

midbrain mantle layer

moderate

regional

moderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 08 09 19 20

trigeminal v ganglion

moderate

regional

moderate expression: see section 04 05 06 07 08 09 19 20 21 22 23 24

ventral grey horn

strong

regional

strong expression: see section 11 12 13 14 15 16 17

stomach

strong

regional

strong expression: see section 05 06 07 moderate expression: see section 03 04 09

hindgut

moderate

regional

moderate expression: see section 15 16 17

midgut

moderate

regional

moderate expression: see section 15 16 17 18 19 20

midgut loop

moderate

regional

moderate expression: see section 09 10 11 12 13 14 15 16 17 18

mandible

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 11 12 19 20 21 22 23

lower jaw incisor

moderate

regional

moderate expression: see section 13 14 16 17

maxilla

moderate

regional

moderate expression: see section 06 07 08 09 10 19 20 21 22

upper jaw incisor

moderate

regional

moderate expression: see section 13 14 16 17

renal cortex

moderate

regional

moderate expression: see section 08 09 10 11 12 18 19 20 21 22

left lung

weak

regional

weak expression: see section 05 06 07 08 09 10 11 12 13 14

right lung

weak

regional

weak expression: see section 15 16 17 18 19 20 21 22 23 24

trachea

moderate

regional

moderate expression: see section 14 15

cranium

weak

regional

weak expression: see section 01 02 03 04 05 06 07 19 20 21 22 23 24

esophagus lumen

moderate

regional

moderate expression: see section 13 14

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4512
Entity Detected:	Epb4.1l1, erythrocyte protein band 4.1-like 1 ( MGI:103010)
Sequence:	sense strand is shown >T4512 GCGTCTTGGAGCCTGCCTGGGCGGCCACTGGACGAAGGGACTCAGAGACAGACAGACAGACGGCTCCCGG AAGCCGCGCCGCCGCCGCCAGGTTAGCAGGGCGCGGAGACCGAGCAGGCTGTTGCTACGTCCCGAGCTCG CGTGCTGGAGGACGTGCGTGGCCGAAGCTACGATTCGTGTCTTTGCGGGTGCCTGGCTGAGGACGTCCTC CCCAGGGAGCCGGTGTGCCGAGGAGGGGCGTGCTGGTCACCATGACAACAGAGACAGGTCCCGATTCTGA GGTGAAGAAGGCTCAGGAGGAGACTCCACAGCAGCCCGAGGCTGCCGCAGCTGTGACCACCCCGGTGACC CCCGCAGGCCACAGCCACCCAGAGACCAATTCCAATGAGAAACATCTGACCCAGCAGGACACGAGGCCTG CTGAACAGAGCCTGGATATGGACGATAAGGATTACAGTGAGGCCGATGGCCTGTCGGAGAGGACCACGCC CAGTAAGGCCCAGAAGTCACCTCAGAAGATTGCCAAGAAGTTCAAGAGTGCCATATGCCGTGTCACCCTG CTCGATGCTTCTGAGTATGAGTGTGAAGTGGAGAAGCACGGCCGGGGCCAGGTGCTGTTTGACCTGGTCT GTGAACACCTTAACCTCCTGGAGAAGGACTACTTCGGTCTGACCTTCTGTGATGCTGACAGCCAGAAGAA TTGGCTGGACCCCTCCAAGGAAATCAAGAAGCAGATCCGGAGTAGCCCCTGGAACTTTGCCTTCACAGTC AAGTTCTACCCTCCTGACCCAGCTCAGCTGACAGAAGACATCACAAGGTACTACCTGTGCCTGCAGCTGA GGGCAGACATTATCACAGGCCGCCTGCCTTGCTCCTTTGTCACGCATGCCCTTCTGGGCTCCTACGCTGT GCAGGCTGAACTGGGTGACTATGATGCCGAGGAACACGTGGGCAACTATGTCAGTGAGCTCCGCTTCGCC CCAAACCAGACCCGGGAGCTGGAGGAGAGGATCATGGAGTTGCATAAGACATACAGGGGCATGACCCCGG GCGAGGCAGAGATCCACTTCCTGGAGAACGCCAAGAAGCTCTCCATGTATGGAGTTGACCTGCATCACGC TAAGGACTCTGAGGGCATCGATATCATGCTAGGTGTCTGTGCCAATGGCCTGCTCATCTACCGGGACCGC CTGAGAATCAACCGCTTTGCCTGGCCCAAGATTCTCAAGATCTCCTACAAGAGGAGTAACTTCTACATCA AGATCCGGCCTGGGGAGTATGAGCAGTTTGAGAGCACCATCGGCTTCAAGCTCCCTAACCACCGCTCAGC CAAGCGGTTGTGGAAGGTCTGCATCGAGCACCACACGTTCTTCCGGCTGGTGTCACCGGAGCCCCCACCC AAGGGCTTTCTGGTGATGGGCTCCAAGTTCCGGTACAGTGGGAGGACGCAGGCCCAGACCCGCCAAGCCA GTGCCCTTATCGACCGACCCGCCCCCTTCTTTGAACGTTCTTCCAGCAAACGCTATACCATGTCCCGCAG CCTTGATGGAGCAGAGTTCTCCCGCCCTGCCTCAGTCAGTGAGAATCACGATGCAGGGCCTGAAGGTGAC AAGCGGGAAGATGACGCCGAGTCAGGGGGACGCCGATCAGAGGCTGAAGAAGGAGAGGTCAGGACACCCA CCAAGATCAAGGAGCTGAAGTTCCTGGACAAGCCAGAGGACGTCTTGTTGAAGCACCAGGCCAGCATCAA TGAACTCAAGAGGACCCTGAAGGAGCCCAACAGCAAACTGATCCACCGGGATCGAGACTGGGATCGGGAG CGCAGGCTGCCCTCGTCGCCTGCCTCCCCCTCCCCCAAGGGCACCCCGGAAAAAGCCAGTGAGAGAGCAG GGCTGAGGGAGGGCTCAGAGGAGAAAGTCAAACCACCACGCCCACGTGCCCCAGAGAGCGACATGGGAGA TGAGGACCAGGACCAGGAGAGGGACGCCGTATTCCTGAAGGACAACCACCTGGCCATTGAGCGCAAGTGC TCCAGCATTACGGTCAGCTCCACGTCCAGCCTGGAGGCTGAGGTGGACTTCACGGTTATTGGTGACTACC ATGGTGGCGCCTTTGAAGACTTCTCCCGAAGCCTCCCTGAGCTTGATCGGGATAAAAGTGACTCTGAGAC AGAGGGCCTGGTGTTCGCCCAGGATCTCAAGGGGCCCTCCAGCCAAGAGGATGAATCTGGGGGCCTCGAG GACAGCCCGGATCGAGGGGCCTGTTCCACTCCAGAAATGCCCCAGTTTGAGTCTGTGAAAGCAGAAACCA TGACCGTCAGCAGTCTGGCAATCAGGAAGAAGATTGAGCCAGAGGCCATGCTGCAAAGCAGAGTCTCCGC TGCAGACAGCACCCAGGTTGATGGGGGTACTCCAATGGTGAAAGACTTCATGACAACTCCCCCCTGCATC ACCACAGAGACCATCTCAACCACCATGGAGAACAGTCTCAAGTCCGGGAAGGGGGCAGCTGCCATGATCC CAGGCCCACAGACGGTGGCCACGGAAATCCGTTCTCTTTCACCGATCATCGGGAAAGATGTCCTCACCAG CACGTACGGCGCCACCGCGGAAACCCTCTCAACCTCTACCACCACCCATGTCACCAAAACTGTGAAGGGA GGGTTTTCTGAGACAAGGATCGAAAAGCGAATCATCATTACTGGGGATGAAGATGTCGATCAAGACCAGG CCCTGGCTTTGGCCATCAAGGAAGCCAAACTACAGCATCCAGACATGCTGGTAACCAAAGCTGTTGTCTA CAGAGAAACAGACCCATCCCCGGAGGAGAGAGACAAGAAGCCACAGGAATCCTGACCTCTGTGAAGAGAT GCTGGCGTGTCTGGTCCAACCCAAGCCAGAGAGCCATTAAGAAGGGGCCTTCACTCTGGATTCTCCGACA ATACCAACATCCCAGCTGCGACGTACTGTCACTGAAGAGAGACTGGGAAGGGAAAGCATATATATATAGA TATATAGAGATATAGATATATATACAGGAAACACCGCGTCCTTGCACCGCTGCTGGGGCTGGCGGAGCAG TCAGCTGATGGCCACGACCAACATCTGCAACAACCTTCATTTCCTTTGCAGACAAATCGAATTGGTGGGA ATTTTTTTTCAGGAAAATGTATAACAATCATAATCTCTCACTCCCCAAACCCCTTCTCCTGCAAACTAAA AAAGCAGACCGCCATGATTGTAGACATTCCCTTGAACCCCAGCTGCACAGACTCCAGGATGGACGAGCAC CCCGTTTGTTCTCCAGCCTCTGTTGCTCCCTCTAATGCAAAGGAAGAAAGAAATTAGATCACGGAGCCAA GGAAGAGAAGTCACAGCAGCAAGACACGCACGGTTGGCTATTTGCCAAGAAAGAATGGAAGTCTCCCCCA TGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACGCTCAGTTGTTCCTTTCTGGGTCTTGACACTGGGC TGCAAAATCCCTTCTCTGTTCTTCTGCCTCCCCGCTTCACCCTTGACCTCTACTCATCCTGTCTTCATAT TCTGTCTCAGCTCCCCTCTGCCTCTCTCCCAACCCTCCTGTTCTGTGTCCTGGTCCTGCTGAGGGCCACT GCAGATAACTCTCATTGGAAGAAAAAGAAACTACAAGAGCAAACAGAAGCCATGGGAAGGGAAGTAGACA CTGTGTGCTTCCGGTTTCTCATGACGGAGGTGCAGCTTGTAGGAGATTATATGACTGTGATTTTAAGTTA TGTATATTACATGTAACAGGAAACAAATATTAAAATAAACTGTGCTGGTAAGTATGCAGCTGACATTTCC AAGTTATAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4954660 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4954660 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10710 same embryo
	EMAGE:10709 same embryo
	EMAGE:10714 same embryo
	EMAGE:10711 same embryo
	EMAGE:10713 same embryo
	EurExpress:euxassay_003221 same experiment
	MGI:4824570 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source