EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:11595

Cpt1a carnitine palmitoyltransferase 1a, liver ( MGI:1098296)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006985. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006985_01	euxassay_006985_02	euxassay_006985_03	euxassay_006985_04

euxassay_006985_05	euxassay_006985_06	euxassay_006985_07	euxassay_006985_08	euxassay_006985_09

euxassay_006985_10	euxassay_006985_11	euxassay_006985_12	euxassay_006985_13	euxassay_006985_14

euxassay_006985_15	euxassay_006985_16	euxassay_006985_17	euxassay_006985_18	euxassay_006985_19

euxassay_006985_20	euxassay_006985_21	euxassay_006985_22	euxassay_006985_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11595_wholemount_strong.wlz

11595_wholemount_moderate.wlz

11595_wholemount_weak.wlz

11595_wholemount_possible.wlz

11595_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11595_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

medulla oblongata part of 4th ventricle choroid plexus

strong

regional

strong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21

adrenal gland

weak

regional

weak expression: see section 08 09 10 17 18 19

thymus primordium

weak

regional

weak expression: see section 11 12 13 14

pancreas

moderate

regional

moderate expression: see section 09 10 11

vibrissa

weak

regional

weak expression: see section 05 06 20 21

diencephalon lateral wall ventricular layer

strong

homogeneous

strong expression: see section 10 11 12 13

diencephalon meninges

moderate

regional

moderate expression: see section 06 07 08 09 10 11 12 13 14 15 16 17

lateral ventricle choroid plexus

strong

regional

strong expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18

telencephalon meninges

moderate

regional

moderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

olfactory cortex ventricular layer

strong

homogeneous

strong expression: see section 09 10 11 15 16 17

telencephalon ventricular layer

strong

homogeneous

strong expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 moderate expression: see section 03 04 05 22 weak expression: see section 01 02

medulla oblongata basal plate mantle layer

strong

regional

strong expression: see section 08 09 15 16

medulla oblongata basal plate ventricular layer

strong

homogeneous

strong expression: see section 08 09 10 11 12 13 14 15 16

hindbrain meninges

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21

rest of cerebellum ventricular layer

strong

homogeneous

strong expression: see section 06 07 08 16 17 18 19 20 21 moderate expression: see section 04 05

pons mantle layer

strong

regional

strong expression: see section 07 17

pons ventricular layer

strong

regional

strong expression: see section 07 08 09 10 11 12 13 14 15 16 17

midbrain meninges

moderate

regional

moderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18

midbrain ventricular layer

strong

regional

strong expression: see section 07 08 09 10 11 12 13 14 15 16 17

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 06 07 17 18

trigeminal v ganglion

strong

regional

strong expression: see section 03 22 moderate expression: see section 04 05 06 07 08 17 18 19 20 21

vagus x ganglion

moderate

regional

moderate expression: see section 08 17

ventral grey horn

strong

regional

strong expression: see section 10 13 14 15 16

intermediate grey horn

strong

regional

strong expression: see section 12 13 14

dorsal root ganglion

moderate

regional

moderate expression: see section 07 08 09 10 11 12 16 17

hindgut

weak

regional

weak expression: see section 14 15

midgut

weak

regional

weak expression: see section 08 09 10 11 12 13 14 15 16 17 18 19

bladder

weak

regional

weak expression: see section 13 14

metanephros

weak

regional

weak expression: see section 08 09 10 18 19 20

urethra of male

weak

regional

weak expression: see section 13 14

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9220
Entity Detected:	Cpt1a, carnitine palmitoyltransferase 1a, liver ( MGI:1098296)
Sequence:	sense strand is shown >T9220 CCCGCCCCGGCCCGGACTCCGCTCGCTCATTCCGCCGCCGCCGTCTGCAGACTCGGTCACCACTCAAGAT GGCAGAGGCTCACCAAGCTGTGGCCTTCCAGTTCACAGTCACCCCTGATGGCATCGATCTCCGCCTGAGC CATGAAGCCCTCAAACAGATCTGCCTGTCAGGGCTGCACTCCTGGAAGAAGAAGTTCATCCGATTCAAGA ATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATC ATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCACT GGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGA TCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGG CAAAATGAGCCGCAGCACCAGAATCTGGATGGCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTG TACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGGTACCTGG AGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGT CAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTATGTGAGTGAC TGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATGG AGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCT GTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCTATTCGTCTTCTGGGATCTACAATTCCCCTCTGC TCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAGACACCATCCAACACG TCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGG GAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAG CCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAGAGTGCCCTGGGCGAAGTGTCGGCAGACCT ATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGA CGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTG CATGGTAGATGTTTCGACAGGTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAG GCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAGTATGTCATGGCCAC CGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAA CCCACCAGGCTACAGTGGGACATTCCAGGAGAATGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCA GTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAA GTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAGGACATGGGCAAG TTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCT GCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACGGCAGAGCAGAGGTTCAA GCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGAC CGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAGGTAC TGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAA ATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCGGTTGCTGATGACGGCTATGGTGTTTCCTAC ATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACAGACTCAC ACCGCTTTGGGAAGCACTTGAGACAAGCCATGATGGACATTATCACCTTGTTTGGCCTCACCGCCAATTC CAAAAAGTAACTGTCGGAGCCGCACGGAAGGAAAATGGACTCTAGTGATACAAACCAAATGAATAGGTGT TGCTCCTGACCATAGGACAGGCAGAAAATTGTTCTTATAAAACTCAGTTTTCCTTCCAGAAGGTTTACCG TCGGTCTCCCTAGAACAACCGTAGGCTCCACCGTTTGACTTGTGACCCTACTACATCCAGAGATGCCTTG GCTCCAGGAATATTGGGCACAGTCCCCCGAAGTCTTTTGAATCGGCTCCTAATGGATAAAGGGATTTAAA TGCTGGTGAATCCCTGGATTTTGGGGGTTGTATCAATATGTGTTGGAGGTGACAGACTTCCTCAGTGGTG ACCCTGTGGATACTTGGGACTTGACTTCACCCAGGCAGTGAGAGCATCACCTTGTGGAAAGAGAAAGTGG CTTCAGAGCCAGTGGAGGTAACAGCTCTAGCTAACACACCTGTAACACACTAATGGAATGGTTAGGCCTG GGGATTAAGGTTCTGCTATGAATGACAGCCACCATCGCTTTGGGAGTCCACATTTGACTCCACATTTCCT GGAAGCAGGATACCACCTCCTCATTGCCACCTTCGAAACCCAGTGCCTTAACGATGGGAGCCCATTGGCA AGTGGGGCCATAGAGAAGGCTTAGCATGTGAAGCCTTTGGGTGGATATGTGAGGGTGCTGCTTCCCCTCA CAAGTTCCTGCATAGAGATGTCCCTAAGTAAGCACTTCCCCCACCCTAGAAGATGAGGTCCCTGGTGGAG GGAGCGATGCAGAATCTCATTGGCCACCAGTTCCATTAAGCAACAAAATAACAGATGTGTCCACAGAGGG AAGTGAGGGGCTTGGTAGTCAAAGGCTACCAAGTTGGACACCAGCTGGAGAGTGTGGCAGCCATTGGCAA GGAGAGTGAGACCCTGGTCACTGAGTCAGGCATACTGACACAGGCAGCCAAAGCCTTGTCATGGCAGCCA GGAGATAGAGATCCTGGCAGATACACCAACGGGCTCATCTTCTAATCCCACCCAGTCAGATTCCAACCAG AGCAAATTCGATAGAAGGCTAGGTCATTTTGGTGACAGACTCGGGGGTCTCAAGTAATGGGTGCTTTGTA CCCAAATACCATCCCTCTGTGAGAGTGCCTTTCTTGACAACATCCAATAGACTGTAAAGCAACTCCGTTT GGTATTCCATGTAAACATAGCATAATGGAGTGGCCTCCCCTACCTGTTACCATCCTGTCCTGACAAGTTT AGCTCTTCGTGTTTTAAATCATGTATTTATTTTCCAGTGCCCCTTTGGCCTTGCTTGATTCCTACTCGTG TGCTAGCTGTAACAGAAGTGAGGGTGGGGTGGCCAGAAGTACAGAGAGGTGCTGGCTGAACAGCTCATGC GTGTTTTATAAGTATCCATGAATACAAAAAAAAGAATCACACCTACAAGGGCCAAAGTTTTTTTCCTACT AAAAACAAGAAAACAAAAGGCAACATAAATATATAGCAGAGACAACTGTAAGTCAAAGCCGCCTGACCGC GCTCTTAGGACTACTTGCTAACCTCTGTTACTCGGAGTATTCCTGCTAGTACCCAAGTGTGACATTCCTC TCTCAGGTCTCCAGTGTCCTTCCTTGCTGCTCCTGAGCAGTTACCAATGCAATTTTTTACTCCTTCCAAG GCAGAAGAGTGGGCTTTCACTGTAAGTGTTCAAAGGAGGAGGTAAGACTACTATGTATTTAATGTGGAAC AAAACATAGTCTTACCGCAGCCAAGGTTCGAATTTGGTTTTCTAATCTGTCCATTGCATGTAAATACCAT ATGCTGTTTGGATATAAATCTTAGAAATGCATGTGTGAACGAATATAGCTGACCATTAATAAAACATTAA TCCCGCCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6832731 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6832731 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11593 same embryo
	EMAGE:11592 same embryo
	EMAGE:11594 same embryo
	EMAGE:11591 same embryo
	EurExpress:euxassay_006985 same experiment
	MGI:4824036 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source