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EMAGE:20515

2210415F13Rik RIKEN cDNA 2210415F13 gene ( MGI:1917413)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20515 EMAGE:20515 EMAGE:20515 EMAGE:20515 EMAGE:20515
"Pseudo-wholemount" of euxassay_012756. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012756_01 euxassay_012756_02 euxassay_012756_03 euxassay_012756_04
EMAGE:20515 EMAGE:20515 EMAGE:20515 EMAGE:20515 EMAGE:20515
euxassay_012756_05 euxassay_012756_06 euxassay_012756_07 euxassay_012756_08 euxassay_012756_09
EMAGE:20515 EMAGE:20515 EMAGE:20515 EMAGE:20515 EMAGE:20515
euxassay_012756_10 euxassay_012756_11 euxassay_012756_12 euxassay_012756_13 euxassay_012756_14
EMAGE:20515 EMAGE:20515 EMAGE:20515 EMAGE:20515 EMAGE:20515
euxassay_012756_15 euxassay_012756_16 euxassay_012756_17 euxassay_012756_18 euxassay_012756_19
EMAGE:20515
euxassay_012756_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20515Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20515_wholemount_strong.wlz
20515_wholemount_moderate.wlz
20515_wholemount_weak.wlz
20515_wholemount_possible.wlz
20515_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20515_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
midgut
strong strong
regionalstrong expression: see section 09 10 11 12 13 14 15 moderate expression: see section 03 04 05 06 07 08
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T38238
Entity Detected:2210415F13Rik, RIKEN cDNA 2210415F13 gene ( MGI:1917413)
Sequence:sense strand is shown

>T38238
TTCGCCATCACAGTTGTAGACTCCCTGAATTGTACACAGTGTCATACGTACAATAGCACCTGTGATGGCC
AGGCCACTGAATGCAATGAGCAGTCCTTCAGTTGTGTGGAGTCCTCTATCAACTCCACTCTAGGAGGGTT
CCTGCATGTGTACCAGAACAAGTTCTGCTCCGAATCGAATTGCACCAAGAACAGCACAGAGGTGGCCTTC
ACTGTCCATCTATTTGATGACCAAAGATACCATTTTGCAAGCCAGTGCTGCCAAGGAGAGTCCTGCAATG
CCACCCACTCTGAATCCGGAACACAGAATGTAACTGACATGCAGTGCATGTCTTGCTATGGTCACAACAA
AACACTCTGCGAGGAGAAACCCCAAAAGTGTTACGAAGGAGAACAATGTGTCTTCATCATTGCGGAGATG
GTAAATGGCTCTGGCAGAGTGGAGCTGAAGGGCTGTTCTGATATCA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 148168. Forward Primer - name:148168_F_cDNA_2210415F13Rik, sequence:TTCGCCATCACAGTTGTAGACT; Reverse Primer - name:148168_N_SP6_cDNA_2210415F13Rik, sequence:TGATATCAGAACAGCCCTTCA. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20516 same embryo
 EMAGE:20519 same embryo
 EMAGE:20518 same embryo
 EMAGE:20517 same embryo
 EurExpress:euxassay_012756 same experiment
 MGI:4822655 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS