EMAGE mouse gene expression spatial database

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EMAGE:10815

Afp alpha fetoprotein ( MGI:87951)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001152. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001152_01	euxassay_001152_02	euxassay_001152_03	euxassay_001152_04

euxassay_001152_05	euxassay_001152_06	euxassay_001152_07	euxassay_001152_08	euxassay_001152_09

euxassay_001152_10	euxassay_001152_11	euxassay_001152_12	euxassay_001152_13	euxassay_001152_14

euxassay_001152_15	euxassay_001152_16	euxassay_001152_17	euxassay_001152_18	euxassay_001152_19

euxassay_001152_20	euxassay_001152_21	euxassay_001152_22	euxassay_001152_23	euxassay_001152_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10815_wholemount_strong.wlz

10815_wholemount_moderate.wlz

10815_wholemount_weak.wlz

10815_wholemount_possible.wlz

10815_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10815_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

foregut-midgut junction

weak

regional

weak expression: see section 14 15 16 17 18

pancreas

weak

regional

weak expression: see section 11 12 13

anal canal

moderate

regional

moderate expression: see section 16

hindgut

weak

regional

weak expression: see section 15 16 17 18

midgut

weak

regional

weak expression: see section 12 13 14 15 16 17 18 19 20 21 22

liver lobe

moderate

homogeneous

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

kidney calyx

moderate

regional

moderate expression: see section 09 10 22 23

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1128
Entity Detected:	Afp, alpha fetoprotein ( MGI:87951)
Sequence:	sense strand is shown >T1128 GTTGGCCTACTGGACTCCCACTTCCAGCACTGCCTGCGGTGAAGGAACCAGCAGCCATGAAGTGGATCAC ACCCGCTTCCCTCATCCTCCTGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAGTTTGGGATA GCTTCCACGTTAGATTCCTCCCAGTGCGTGACGGAGAAGAATGTGCTTAGCATAGCTACCATCACCTTTA CCCAGTTTGTTCCGGAAGCCACCGAGGAGGAAGTGAACAAAATGACTAGCGATGTGTTGGCTGCAATGAA GAAAAACTCTGGCGATGGGTGTTTAGAAAGCCAGCTATCTGTGTTTCTGGATGAAATTTGTCATGAGACG GAACTCTCTAACAAGTATGGACTCTCAGGCTGCTGCAGCCAAAGTGGAGTGGAAAGACTTCAGTGTCTGC TGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAA AGCACATGAAGAAAACAGGGCAGTGTTCATGAACAGGTTCATCTATGAAGTGTCAAGGAGGAACCCCTT
Notes:	The probe template was PCR amplified from IMAGE:2135594 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2135594 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10817 same embryo
	EMAGE:10816 same embryo
	EMAGE:10814 same embryo
	EMAGE:10813 same embryo
	EurExpress:euxassay_001152 same experiment
	MGI:4823023 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source