EMAGE mouse gene expression spatial database

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EMAGE:10841

C1s complement component 1, s subcomponent ( MGI:1355312)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001154. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001154_01	euxassay_001154_02	euxassay_001154_03	euxassay_001154_04

euxassay_001154_05	euxassay_001154_06	euxassay_001154_07	euxassay_001154_08	euxassay_001154_09

euxassay_001154_10	euxassay_001154_11	euxassay_001154_12	euxassay_001154_13	euxassay_001154_14

euxassay_001154_15	euxassay_001154_16	euxassay_001154_17	euxassay_001154_18	euxassay_001154_19

euxassay_001154_20	euxassay_001154_21	euxassay_001154_22	euxassay_001154_23	euxassay_001154_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10841_wholemount_strong.wlz

10841_wholemount_moderate.wlz

10841_wholemount_weak.wlz

10841_wholemount_possible.wlz

10841_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10841_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

liver lobe

weak

homogeneous

weak expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 16 17 18 19 20 21 22 23 24

kidney calyx

weak

regional

weak expression: see section 09 10 11 19 20 21 22

chondrocranium

weak

regional

weak expression: see section 01 02 03 04 05 06 22 23 24

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4869
Entity Detected:	C1s, complement component 1, s subcomponent ( MGI:1355312)
Sequence:	sense strand is shown >T4869 ATCAGCTCCTGAAGGTAACAACTTTAAAGAGCAAGCCTTAAAGAGAGAAGCTTTGATGAAGGAAGAGGGA AAGACAAGGAACCATGTACAGTGACACTGAGCCCTGGGTGGTCCCTCACTACCAAAGCAGGCACCTGTAC TTGTCAGATAAAGACAGCCAGGACTGCTGACTGCCCTTTACCTCCAAAATCAGAGAGCCAGAGAGCCAGA GAGCCATGGGCAAATCGCCAGGGATGTGGTGTTTGGTCCTGTTTTCTCTTTTGGCATCATTTTCTGCTGA GCCCACCATGCATGGGGAGATCCTGTCCCCTAACTATCCCCAGGCGTACCCCAATGACGTCGTGAAATCT TGGGACATTGAAGTCCCAGAGGGGTTTGGGATTCACCTCTACTTTACCCATGTGGACATAGAGCCGTCAG AGAGCTGTGCATACGACTCAGTGCAGATAATCTCAGGAGGCATCGAGGAAGGGAGACTCTGTGGCCAGAA GACCAGCAAGAGCCCCAACTCCCCCATTATAGAAGAGTTTCAGTTCCCATACAATAAACTTCAGGTGGTC TTTACCTCAGACTTCTCCAACGAAGAACGGTTTACGGGCTTTGCAGCATACTACACTGCCATAGACATAA ATGAATGCACAGATTTTACAGATGTCCCCTGTAGCCACTTCTGCAATAACTTCATTGGTGGATACTTCTG CTCCTGTCCCCCAGAATACTTCCTCCACGATGACATGAGGAATTGTGGAGTCAACTGTAGTGGAGATGTG TTCACTGCCCTGATTGGGGAGATCTCAAGTCCCAATTATCCCAATCCATACCCGGAGAACTCAAGGTGTG AATACCAGATTCAGCTGCAGGAGGGCTTCCAAGTGGTGGTGACGATGCAAAGAGAAGATTTTGATGTGGA GCCTGCTGACTCAGAGGGGAACTGCCCTGACAGTTTAACTTTTGCTTCAAAAAACCAACAGTTTGGTCCT TACTGTGGTAATGGGTTCCCTGGACCGCTAACTATTAGAACCCAGAGCAATACTCTCGGCATTGTCTTTC AAACTGACCTAATGGGGCAAAAGAAGGGTTGGAAGCTTCGTTACCATGGAGATCCCATCTCCTGTGCCAA AAAAATCACTGCCAATTCTACTTGGGAGCCCGATAAGGCAAAATACGTGTTTAAAGATGTGGTGAAGATA ACCTGTGTGGACGGATTTGAAGTTGTGGAGGGACATGTTAGCTCTACTTCATACTATTCCACTTGTCAAA GCGATGGACAGTGGAGCAACTCCGGTCTAAAATGTCAACCTGTGTATTGTGGAATTCCAGATCCCATTGC GAATGGTAAAGTTGAAGAGCCAGAGAATAGTGTGTTTGGTACTGTTGTTCACTACACGTGTGAAGAGCCA TATTACTACATGGAACATGAAGAAGGTGGGGAGTATCGATGTGCTGCAAATGGGAGATGGGTAAATGACC AGCTGGGTATTGAGCTTCCAAGATGTATTCCAGCCTGTGGAGTACCCACCGAGCCCTTTCAAGTGCATCA GAGGATATTTGGAGGACAACCTGCAAAGATTGAAAATTTTCCCTGGCAAGTCTTCTTTAATCACCCCAGA GCTAGTGGGGCTCTTATTAATGAGTACTGGGTGCTGACGGCTGCTCACGTTTTGGAGAAAATCTCCGACC CTTTAATGTATGTCGGGACCATGTCTGTGAGGACAACTCTCTTGGAAAATGCCCAGAGACTCTACAGTAA ACGTGTCTTTATTCATCCCAGCTGGAAGAAAGAAGATGACCCAAACACACGGACAAATTTTGACAATGAC ATTGCCCTGGTGCAGCTGAAAGACCCTGTGAAAATGGGACCCAAAGTCTCCCCCATCTGCCTACCAGGCA CCTCCTCAGAGTACAACGTCTCACCGGGTGACATGGGGCTGATCTCAGGGTGGGGCAGTACAGAAAAGAA AGTCTTTGTTATCAACCTCAGAGGGGCAAAGGTACCAGTAACCTCTTTAGAAACCTGCAAACAGGTGAAA GAGGAGAACCCCACTGTAAGGCCTGAGGACTATGTTTTCACTGACAACATGATCTGTGCTGGCGAGAAAG GTGTTGACAGCTGTCACGGGGACAGCGGCGGGGCTTTTGCTTTCCAGGTCCCCAATGTCACGGTCCCCAA ATTCTATGTAGCTGGCTTGGTGTCTTGGGGGAAAAGGTGTGGGACTTATGGGGTTTACACAAAGGTAAAG AATTACGTGGACTGGATCCTGAAAACTATGCAGGAGAATAGTGGGCCCAGGAAGGACTAATCCGTAGGGC GACAACTCCCCTCAAGGGCATAGCAAGCTCACTGTTCTCAGATCCTATGGTGGTCCCCTTATTTCACAAC GATGGAGAGAAGATGTGGGAGTATGGTTAATGCTGAACTTGATTGTCAAAGAGTCTGCATGGAGGCAGGG TTGATCACTGAGCCGTGTTGGTTATTCAGTTACTATTGCTAACAACATGGCAGAAACCCTTCTATCTTGC GCTATTCCACAGGGATATCTTATCCGATCTTCCCTCATTTAACCTGCTTGAAATTCCTGAATAATTTACA GCAAAGCATGCTTCCAACCTGGTTCTGGCTGTATGGAGAGCCACGAAGGAGAGAGAGGGAGATTTGGGGG CATAGCATCATGGAATTCAGGCATCAACAGCATGGAACTCTGCATCTCTAACAAGATGCAGACAGGGAAC ACAGCCTTTTATTCTTTCTAGTGAGACTTACCGAATACTCAGAAGTTAGAAATGACTACCTTAGTTTTTC TCTGTGAGTTGCTTCAATATATTTCCTAGAAATTAATTTTCTTGTAATCCTCCTTTGTATCATACAGTGT AATGACTTAGTAAAATAGAAATTGAACATTAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5097206 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5097206 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10842 same embryo
	EMAGE:10845 same embryo
	EMAGE:10844 same embryo
	EMAGE:10840 same embryo
	EMAGE:10843 same embryo
	EurExpress:euxassay_001154 same experiment
	MGI:4823544 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source