EMAGE mouse gene expression spatial database

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EMAGE:17389

Lrrc15 leucine rich repeat containing 15 ( MGI:1921738)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003707. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003707_01	euxassay_003707_02	euxassay_003707_03	euxassay_003707_04

euxassay_003707_05	euxassay_003707_06	euxassay_003707_07	euxassay_003707_08	euxassay_003707_09

euxassay_003707_10	euxassay_003707_11	euxassay_003707_12	euxassay_003707_13	euxassay_003707_14

euxassay_003707_15	euxassay_003707_16	euxassay_003707_17	euxassay_003707_18	euxassay_003707_19

euxassay_003707_20	euxassay_003707_21	euxassay_003707_22	euxassay_003707_23	euxassay_003707_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17389_wholemount_strong.wlz

17389_wholemount_moderate.wlz

17389_wholemount_weak.wlz

17389_wholemount_possible.wlz

17389_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17389_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

rib

moderate

regional

moderate expression: see section 01 02 21 22 23 weak expression: see section 03 04 05 17 18 19 20 24

head mesenchyme

strong

regional

strong expression: see section 04 05 23 24

pectoral girdle and thoracic body wall muscle

strong

regional

strong expression: see section 03 04 11 12 13 14 15 16 18 moderate expression: see section 19

vibrissa

strong

regional

strong expression: see section 06 07 08 09 20 21 22 23

lower jaw incisor

moderate

regional

moderate expression: see section 11 13 16 17

upper jaw incisor

moderate

regional

moderate expression: see section 12 13 16 17 18

clavicle

moderate

regional

moderate expression: see section 08 09 17 weak expression: see section 07 18

tail mesenchyme

strong

regional

strong expression: see section 11 14

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7764
Entity Detected:	Lrrc15, leucine rich repeat containing 15 ( MGI:1921738)
Sequence:	sense strand is shown >T7764 CCGCCTCCTCTCCTCGCCGCCTCCTTCTTATTGACCCGGCAGCCTCGTGGAGCTGCTGGCCATGCCGCTG AAACATTATCTCCTTTTGCTGGTGAGCTGCCAGGCCTGGGCTGCAGGTTTGGCCTACTATGGCTGCCCCA GCGAATGTACCTGTTCCCGGGCCTCCCAGGTAGAGTGCACAGGGGCACAAATTGTGGCGATGCCTTCCCC TCTGCCCTGGAATGCTATGAGCCTGCAGATCCTTAACACACACATCACCGAACTCCCCGAGGACAAGTTC CTCAACATTTCAGCCCTCATCGCCCTGAAGATGGAGAAGAACGAGCTGGCCAACATCATGCCAGGTGCCT TCCGCAATCTGGGCTCGCTGCGTCACCTCAGCCTTGCCAACAACAAACTAAAGAACCTGCCCGTTAGGCT CTTCCAGGATGTGAACAATCTGGAGACCCTCCTGCTGTCCAATAACCAGCTGGTGCAGATCCAGCCGGCC CAGTTCTCCCAGTTTAGTAATCTTAAGGAACTCCAGTTGTATGGCAACAATCTGGAATACATCCCCGAAG GAGTCTTTGACCACCTGGTAGGTCTCACCAAACTCAACCTGGGCAACAACGGCTTCACCCACCTATCCCC TAGGGTCTTTCAGCATCTGGGCAACCTCCAGGTGCTTCGGCTATATGAGAACAGGCTTTCAGACATCCCC ATGGGCACTTTTGATGCACTTGGCAACCTCCAGGAGCTGGCCCTCCAAGAGAACCAGATTGGCACCCTCT CCCCTGGCTTGTTCCACAATAACCGTAACCTCCAGAGACTGTATCTATCCAACAACCACATCTCACATCT GCCCCCTGGCATCTTCATGCAGCTGCCCCACCTTAACAAGCTCACACTCTTTGGGAATTCCCTGAAGGAG CTTTCCCCGGGGGTCTTTGGGCCCATGCCCAACCTGAGGGAGCTTTGGCTCTACAACAATCACATTACCT CCCTCCCTGACAATGCCTTCAGCCACCTGAACCAGTTGCAGGTTCTGATTCTTAGTCACAACCAGCTCAG TTACATCTCCCCAGGAGCCTTCAATGGGCTGACGAATCTCCGAGAACTGTCCCTCCACACCAATGCTCTA CAGGACCTGGATGGGAATGTCTTCCGATCACTGGCCAACCTGAGGAACGTCTCACTCCAGAATAACCGCC TTCGACAGCTCCCTGGCAGCATCTTCGCCAACGTCAATGGTCTCATGACCATCCAACTGCAGAACAACAA TCTAGAGAACTTGCCTCTGGGCATCTTTGATCACTTAGGGAACCTGTGTGAGCTTCGTCTCTATGACAAC CCCTGGAGATGTGACTCAAACATCCTCCCACTTCATGACTGGCTCATTCTCAACAGAGCCAGGTTGGGGA CAGACACTCTTCCAGTGTGTTCCAGTCCAGCCAGTGTCCGAGGCCAGTCCCTTGTCATCATCAATGTCAA TTTCCCTGGACCCAGTGTCCAGGGCCCAGAAACCCCTGAAGTATCTAGCTACCCAGATACATCCAGCTAT CCTGACAGCACATCCATTTCTTCTACCACAGAGATCACCAGGTCTACCGATGATGACTACACCGATCTAA ACACCATCGAACCCATTGATGACCGCAATACATGGGGCATGACTGATGCCCAGAGTGGGCTGGCCATTGC TGCCATTGTGATTGGCATCATAGCTTTGGCCTGTTCCCTCGCTGCCTGTATCTGCTGCTGCTGCTGCAAA AAGAGGAGCCAGGCAGTCCTGATGCAGATGAAGGCTCCCAATGAGTGCTAGGGAGGCAAGCTCGAACAGG GTGGGGGAAGGAGGAGGTCAGAGGATCCGAGAAGGTGATCATTCAACTTCCAAACCTGGGGCCACATAAC CAGGCCCTGGTGGCCCCAGGGGAAATGTGCCCCATCTTGTCCTGTGCCCCTGAATCTTCTATAGAGAAGC AGGTGTTTCAGGACCTTTTACTCCCAGAGAAATCTAATTGGTCATTAAAAAAAAAAAAAAAGCAAGCAAG CAAGAAACCAATCAACCAAGGGGTTTCTCGGTCAGTGCCTAGGCAACTTTCTGAGGGGCCCTCTGCCAAA TCCTCACTTCTTTCAAGAACAAGCTTCCCCGTGCCCAGCCCCTCCCAACCTCTGTAGACTTAATGATGAC AAGGCCTGCTCACATGGTGAGATAGTTCTCTGCTGGCACAGCTGTGCCTCAAAGTATTATAGATGCTGCT TTCTTTTTTTTCCCCTCTCGCTTCTCCTTTTTGTGCCACGGCTTGACTCTGTCTCTTCCAGTGAGAGGTC CCCCTTTTGTTTATCTGCTGCTGAAGACAGACTATATTCTCTCTCCGAGAGGGTTTGAATCTTTTAGCTC ACTGCACTGGCTTTGGAGGGTGTTCTGCAAGACAGGAAGACATCTGTGCCATCTGATCCAAGGCAGTGTT ATTGTCAGCATCTGCTGTGCCAAGCTCAGCCTTTCAGAGGAGCATGTTTAAAGCCTCAAGCTTTCCTTCA AAGAGCCTGGCCCTTGATGGTATAGAATCATGCCAAATGGCTAAGTTCTCAAAACACAAAAATCAGCTCA CTGAAAGTGGCTGAAGAATGTGACCCGCTGCCTGGGGTCCTTGCACACCCTGCTGCCTTTGCCTCTTCTG ATTTTGTATTGAAGCATCACACACATACCCGTGTGATTGGCATGATACCAAGAAATGGTATTGTAGTGAC TCCCCACTCCAAGCTTGTTCTGGGGGACTTTCTGGGGATGCTGGAGAGTTTCTAGCTTCCCCATGGTCTG GGGAAGGATTCTTACAACCTCCCCTACCTCTCCATGGGAAGGAAGCCTTTGCATAGGCCCAGCTGTTAGG AGTAAAAGAGATGTAGGTGCAGTCAGGACAAAAAGCAGCCACGCTGGCCAGACCAGAAGCATAGAAACGA CAGTGGCCTGTGCAAGCACTTCTTCCCTGACAGTGAGCCCCGTGTTGCTCATTGGCAGCCCCTCTACTAA TCCTTTTATGGGCATTCTAGGCCTGTATCTGTTTCTAATTTTTGTTCCCCACTTGGGGGGAAGCAAAATT GCTAAGAGATGAGATCTTCCAGCTGAACGACCAAGTGTAATGGAAACCAGGAATCAGTCTATACTGTGGT CAAATTCTCCATCAGCATTAGTCAGCTGTAGCTAGAGTGCAGCGTGTTTACAGACAGCAGATATCGGGGC ACGCTGGAAGGTCACACGAGGGTATGGGGTGCTCTGCAGAACTTTCTGCCTGGGGTCTGGTTGTGAACTG AGTGGTTTAGTTTAGAGTTTTCTCTTTGGGTGACAGTCACACTATATCTGCCTTAGCTCTGTTTCCTGCT ACAAACTATTTCTGCACATTAAACAGTTCTGATAAGACAACACAGCTTTCTCAGGACGACTAATACACCA ATCCATGCAGAAGTAAAAGCTTCAAAATAAGCAGACATGGTGGGTCATGTCTTTAGTGAGTTCAAGAGTA GCCTGTCTACAGAGCAAGTTCCAGGATGGCCAGGGCTATGCAGAAAGACCCTCCCTCAAAAACAACACAG GAAACAAAGAATTTCAGGTTTCTCTGTAAGTGAGGGAAAGACCCCAGCTAAGCACAGGGATTTGTGAAGT GACTCTATCTCCAACCTGAGGTGACACTCATAAGGCAAATCAGAAACCCCTCTGGGTCTTGGCAATGTGG AACTTACACTATGTCCAGGTCCCCGACAGAATACTTCATAAGGAACGCTTGTGAGAACCAACACACTCGA TGGCCCAGGGAAGCTGATGTTGGTCAAAAGACATCATCTTTCCAAGGCCAATCTGGGTCGTCAAAGTGTT TGTAAAGTATCTCTAGCAACTGGCACACACGAACCAAAGTTGTCTCCAGCCCCAGAGTGAGTGTGAGCTT GGTTCTGCTGGCTGTGGCTTGCTGGTAGGTCCTGGGGCGAAGAGAAGGAGCTGGGCCTGCTTTACAGCAG ATGGAAGCTTGACACAGTACCGTGCTCCCAGAACTATCAGGCGCTCCTTGTGAGCTATGCCCATCCTCAG TGGGCTAAGGATAGAGAGAGGTAGCATCCATAGTATCCAGTGTCCCCTGCCAATCATAACCTGGAAACAC AGGCTACATCTGACATTGACCATGGCAGTGGTGTACCTCACTGGCTCAAAGGCTGGCCTGAGGACAGCTG TCCTCTAATGACATGCCCAGGAGCTCCCAGGCAGTGAGCGAAGGCACAGTTCCTCAAAATCACATTTTCT AGTCAGGGAGAGAGTTGGCAGAACACTGGGTGGAGGGTCCTTTCCAATAAGGTAATCCATTTTGCTCAGT TCTTGGGCTGGAAAAAGCTCTGTGGTCCCTAGAAGTCTGTGATAGGGTGCAGAGTTCAATCCACTCGCCT CATCTGTTCAGTGCTTTCTAGACTGCCATCCCAGCCTTGTGCAGAGTGGGGAGAACAGTTGACTCTAGAA GGCTAATAAAGGCCAACCAGAACTAGCATGGTAAAGATGTTCAGGGCCTGGGTGTCCTTCAAAGCTCTTC CCCTAACCCTCTTGGCACCTTAGGAAACTAGTTCCACCATTATCTTTTGTGAGTCTTTTCTGCACAGTGC CCAACTTACAATCCCTGTAGAGGCTTCATGGGCTGTCTAGGGCTTTCATCAGGAGACTGTAGGAAACAGC TCGCAGTACAGTTACAGCTGGCTTCTTGGAGCATCTCACCCACAGCCATACAGTTTCCACAGGCATCGAG ATGGTGGAATGGAAGTGTGGAAGCCGGTTCCAGCCTTGGGAGAGCATGAAGAACAGAATGATAACATGAG TCAGGAAGCAGGCCTTGCATGTGTCCTAGACTTAGCTATAAACTACTTAAAGATCTGTCCCCAGACTCCG AAGTCAGAGCCAGATCTGGCTGTGGAAGAGAATCTGGCTGTTGATGATTGCAGGAGGGAAGCCATTAGTG TTGTCTGAGAGAGTGTGCAGCAGGTAACTTCCATGTGGAGCCCCACCGAGTCAGGGCCCTTCTCCTAAGG AGAGATTGTTCTTGCCTCCCACTGTCTTTGCTCTGCCTTCTAGAACAATCATGCTTGACTTACTAGACAG TCTCCGCAAGTAGTCCCAGTTGCTTGGCAGTGCATTTAGAGATTTCTAGGCTCCCAGGGTTCTGTAGAAT GTGAGCCCTGCTGGGCAGGTTTAGGGGAATCTGTCCTTTGCTAGATGCGGCTTGTAACAGATTTGGTGTA CAGGATCAACAATAAACGGTATACAAAGAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6312567 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6312567 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17385 same embryo
	EMAGE:17388 same embryo
	EMAGE:17384 same embryo
	EMAGE:17387 same embryo
	EMAGE:17386 same embryo
	EurExpress:euxassay_003707 same experiment
	MGI:4825988 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source