Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:21515

Synpr synaptoporin ( MGI:1919253)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515
"Pseudo-wholemount" of euxassay_001093. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001093_01 euxassay_001093_02 euxassay_001093_03 euxassay_001093_04
EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515
euxassay_001093_05 euxassay_001093_06 euxassay_001093_07 euxassay_001093_08 euxassay_001093_09
EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515
euxassay_001093_10 euxassay_001093_11 euxassay_001093_12 euxassay_001093_13 euxassay_001093_14
EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515
euxassay_001093_15 euxassay_001093_16 euxassay_001093_17 euxassay_001093_18 euxassay_001093_19
EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515 EMAGE:21515
euxassay_001093_20 euxassay_001093_21 euxassay_001093_22 euxassay_001093_23 euxassay_001093_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21515Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21515_wholemount_strong.wlz
21515_wholemount_moderate.wlz
21515_wholemount_weak.wlz
21515_wholemount_possible.wlz
21515_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21515_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
hypothalamus mantle layer
moderate moderate
regionalmoderate expression: see section 9 0 1 2 4 5 6 7 8
diencephalon lateral wall mantle layer
moderate moderate
regionalmoderate expression: see section 8 9 0 1 2 3 4 5 6 7 8 9
telencephalon mantle layer
strong strong
regionalstrong expression: see section 5 6 7 8 9 0 0 1 2 3 4 moderate expression: see section 1 2 3 4 1 2 3 4 5 6 7 8 9
olfactory cortex marginal layer
moderate moderate
regionalmoderate expression: see section 8 9 0 1 2 3 5 6 7 8 9 0
medulla oblongata alar plate mantle layer
moderate moderate
regionalmoderate expression: see section 7 8 9 0 1 5 6 7 8 9
medulla oblongata basal plate mantle layer
moderate moderate
regionalmoderate expression: see section 2 3 4
rest of cerebellum mantle layer
moderate moderate
regionalmoderate expression: see section 5 6 6 7 8 9 0 1 2 weak expression: see section 4 3
rest of cerebellum marginal layer
moderate moderate
regionalmoderate expression: see section 5 6 7 8 9 0 1 2 5 6 weak expression: see section 3
pons mantle layer
moderate moderate
regionalmoderate expression: see section 6 7 8 9 0 1 3 4 5 6 7 8 9 0
pons marginal layer
moderate moderate
regionalmoderate expression: see section 2
midbrain mantle layer
moderate moderate
regionalmoderate expression: see section 7 8 9 0 1 2 4 5 6 7 8 9
facial vii ganglion
moderate moderate
homogeneousmoderate expression: see section 5 weak expression: see section 4 6 7 1 2 3
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 7 8 9 9 0
trigeminal v ganglion
moderate moderate
homogeneousmoderate expression: see section 5 weak expression: see section 3 4 6 7 8 9 8 9 0 1 2 3
vagus x ganglion
moderate moderate
regionalmoderate expression: see section 8
vestibulocochlear viii ganglion
moderate moderate
regionalmoderate expression: see section 5 6 7 8 9 8 9 0
dorsal grey horn
moderate moderate
regionalmoderate expression: see section 1 2 3 4 5 6 7
ventral grey horn
moderate moderate
regionalmoderate expression: see section 1 2 3 4 5 6 7
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 9 0 1 7 8 weak expression: see section 8 2 9
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4355
Entity Detected:Synpr, synaptoporin ( MGI:1919253)
Sequence:sense strand is shown

>T4355
GCTGGAACCTACAGCCGGCGCTCCCCACTCACCCCGGGTCCCGGGTGAGCCGCTCACCACCAGAAGTGGC
TTCTGACCCTGGGGAGCGTAGGTCAGAGGAACTTCATTCCTGAAGGGAACTGGTTCGAGAGAAGACAGAG
TACGGGAGAGCCATGGACCCTGTGAGCCAGGTGGCCTCTGCGGGCACCTTTCGGGCATTGAAGGAACCCC
TTGCCTTCCTGCGAGCTCTGGAGTTGCTTTTTGCAATGTTTGCATTTGCAACATGTGGTGGCTATTCAGG
AGGCCTGCGGCTGAGTGTGGACTGTGTCAATAAGACAGAAAGTAACCTCAGCATTGACATAGCGTTTGCG
TACCCATTCAGGCTGCAACAGGTGACCTTTGAAGTGCCCACCTGTGAGGGAAAGGAACAGCAGAAGCTGG
CATTGGTTGGAGACTCCTCATCCTCAGCAGAATTCTTTGTCACCGTGGCTGTGTTCGCCTTTCTCTACTC
CCTGGCTGCCACGGTCGTGTACATTTTCTTCCAGAACAAGTACCGCGAAAACAACCGGGGCCCACTCATT
GACTTTATCGTCACTGTAGTCTTTTCATTCTTGTGGCTGGTGGGTTCCTCTGCTTGGGCAAAAGGACTGT
CTGATGTCAAAGTGGCAACAGATCCCAAAGAAGTCCTGTTGCTGATGTCAGCTTGCAAGCAGCCTTCCAA
CAAGTGCATGGCTGTCCACAGCCCTGTCATGTCCAGCTTAAACACATCTGTGGTCTTCGGGTTTTTGAAT
TTTATCCTCTGGGCTGGAAACATTTGGTTTGTTTTCAAGGAGACTGGCTGGCATTCCTCTGGACAGAGAT
ACCTTTCAGACCCCATGGAGAAGCACTCCAGCAGCTACAATCAAGGACGCTACAACCAAGAGAGTTATGG
GTCAAGTGGTGGGTACAGCCAGCAGGCGAATCTGGGGCCAACTTCCGATGAGTTTGGCCAACAGCCTAGT
GGTCCCACTTCCTTTAACAATCAGATATAACGGAGTATCACCCAAATTCTTCTGGTGATAGCATCACCAC
CCTCCATTTCAGTAGCAGAAGAATTTTTAAGAGTTTCAATCAATTATTAATGTAGAGAATGTTGAATGTA
AATCAGAGATCTGTAGTCCTCATTAAGACACAAAGGCCTGGGTGGTGATAAATGGTACTTAGAGATGAGA
TGTCATAAGGAGATAAATTATTCATCACAGATGGGTAATTAGAAAGTATCTTGTTATATACACAGACACT
TTTATGGTCGTTTTGTATTGTGGTAAAAATAGTAGAAGCATTTGTAGCTTAAAGTCTCTAGTATGTAATG
TGCATAGATTACCTTAAATAGTATACAGTTTTCGTATGTGTTTTGATGCAACAAATATTTTACTGATTTC
TAGATGACTATTTGATGAATCACATCATGCATGCATTACTATTTTTTAGTTTAGGCCTTTTAGAACTGTA
ACTCTGTTTTGATAATTATTCTCTATTGTTTTCACTTGATAAAACAATGTTTATATGATTTCATGCATGA
ATAAGTATTTTCTCACAGAATGTTTGGCTGTATTTCTGGAGACATTTCAGTTTGCATCATGAGTTTGTTA
AGCAAGTATTTAAAGACATGTATGCATGTCTTTCTAGACTTTGCAAGTTTGTCACTCTGACTTTACCCAA
GTTCTGAATGCATTAGAGCTAAAGTCTGGGAGCTTTCCCTATTTGTCAATAGTGTTCTGTAAGGTGACTG
CTCAACACTTCTCTGATTTATTTAAGTAAATATTTACATTCTTGTAACTTTCTATGCAGTTTCGTGTATC
TTATCTTACGAGCCATGACTGATAACGTCCAATGACCCTGTGCTTGTAGAGTGGCGTTTTCTTTGCATCC
AGAGAGGCAGATTTAGACACCATAGTTTAAGTAGTATTAAGAAATGAGCTATGCTGTTTTATGTGACCAA
ATGAACGTTTGTTTAGTTTTGTTTATTTTTGAAGCTAATATGTTGTTCATTCTAATTTTAGAAATCTCAT
GTTATAGCTTAACAGAATTACTAATTTCGATTTGCTTATACATAGATTAATAATGGCTTCTCTATGTCAC
TCTATTCCCAAAGAGGGTTCTCATGAAACTCTCCACAGAACATATTCATTATTAAGAAGAAACCAATCTT
CGTTTCTTCATTTTAACTCAATTGAAATAAGAATGCCCAACAGGAAGGGCAAGCTAAACATCTGTGCTTC
TAGATAAAGTTGTAACTGATGTGCAAATTGTATGTGTGATCTGTGATGTTGAAAGCAGTTTAGCACAAAA
TAGGCTGTCTTAAATACTATCTGTAACTAGTTTCTTAAATCCTATTGTTTATTAAATCCTGTACTGTGAT
ATCTATTTGACCTCAATAAAGTTATTGCATACAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4527827 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4527827 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_001093 same experiment
 EMAGE:21517 same embryo
 EMAGE:21518 same embryo
 EMAGE:21513 same embryo
 EMAGE:21514 same embryo
 EMAGE:21516 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS