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EMAGE:31653

Pax5 paired box gene 5 ( MGI:97489)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
midbrain mantle layer
strong strong
regionalstrong expression: see section 06 07 08 09 10 17 18
metencephalon rest of alar plate mantle layer
strong strong
regionalstrong expression: see section 06 07 08 09 10 11 14 15 16 17 18 weak expression: see section 13
rest of cerebellum mantle layer
strong strong
regionalstrong expression: see section 07 08 09 10 11 14 15 16 17 18 weak expression: see section 12 13
pons mantle layer
strong strong
regionalstrong expression: see section 10 11 14 15 16 17 18 weak expression: see section 13
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35512
Entity Detected:Pax5, paired box gene 5 ( MGI:97489)
Sequence:sense strand is shown

>T35512
GTATTCAGGAGTCTCCAGTGCCGAATGGCCACTCACTTCCGGGCCGGGACTTCCTCCGGAAGCAGATGCG
GGGAGACCTGTTCACACAGCAGCAGCTGGAGGTGCTGGACCGCGTGTTTGAGAGACAGCACTACTCTGAC
ATCTTCACCACCACGGAACCCATCAAGCCAGAACAGACCACAGAGTATTCAGCCATGGCTTCACTGGCTG
GAGGCCTGGATGACATGAAAGCCAACTTGACGAGCCCCACCCCCGCTGACATCGGGAGCAGCGTTCCAGG
CCCACAGTCCTACCCTATTGTCACAGGCCGAGACTTGGCGAGCACAACCCTCCCGGGGTACCCTCCACAC
GTCCCCCCCGCTGGACAGGGCAGCTACTCTGCACCGACGCTGACAGGGATGGTGCCTGGGAGTGAATTTT
CTGGAAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 98284. Forward Primer - name:098284_F_cDNA_Pax5, sequence:GTATTCAGGAGTCTCCAGTGCC; Reverse Primer - name:098284_N_SP6_cDNA_Pax5, sequence:CTTCCAGAAAATTCACTCCC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_008993 same experiment
 EMAGE:30525 same embryo
 EMAGE:31717 same embryo
 EMAGE:31651 same embryo
 EMAGE:31646 same embryo
 EMAGE:31645 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS