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EMAGE:7037

Sspn sarcospan ( MGI:1353511)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037
"Pseudo-wholemount" of euxassay_002504. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002504_01 euxassay_002504_02 euxassay_002504_03 euxassay_002504_04
EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037
euxassay_002504_05 euxassay_002504_06 euxassay_002504_07 euxassay_002504_08 euxassay_002504_09
EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037
euxassay_002504_10 euxassay_002504_11 euxassay_002504_12 euxassay_002504_13 euxassay_002504_14
EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037
euxassay_002504_15 euxassay_002504_16 euxassay_002504_17 euxassay_002504_18 euxassay_002504_19
EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037 EMAGE:7037
euxassay_002504_20 euxassay_002504_21 euxassay_002504_22 euxassay_002504_23 euxassay_002504_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7037Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7037_wholemount_strong.wlz
7037_wholemount_moderate.wlz
7037_wholemount_weak.wlz
7037_wholemount_possible.wlz
7037_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7037_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5147
Entity Detected:Sspn, sarcospan ( MGI:1353511)
Sequence:sense strand is shown

>T5147
CCACGCGTCCGGCCCAGCAGCAAGGCCCAGGCGCAGGCACCACCGAGGGAACATGGGGCGCAAGCCGAGC
CCCAGGGCTCAGGAGCTGCCTGAGGAGGAGGCGCGGACCTGCTGTGGCTGCCGCTTCCCGCTGCTGCTGG
CACTGCTGCAGCTGGCGCTGGGCATCGCGGTGACCGTGCTGGGCTTCCTCATGGCGAGCATCAGCCCCTC
CCTGCTAGTCAGAGATACTCCGTTCTGGGCTGGGATCATTGTCTGCGTGGTGGCTTACCTTGGACTGTTC
ATGCTTTGTGTCTCATACCAAGTTGACGAGAGGACATGTGTCCAGTTTTCTATGAAGGTATTCTACTTCC
TGTTGAGTGCCCTCGGCCTGATGGTCTGCATGCTGGCTGTGGCCTTTGCTGCCCACCACTACTCCCTGCT
TGCGCAGTTTACCTGCGAGACCTCCCTGGATTCTTGCCAGTGCAAGCTGCCTTCCTCGGAGCCGCTCAGC
AGGGCCTTTGTTTACAGGGATGTGACTGACTGTACCAGCGTCACTGGCACTTTCAAATTGTTCTTAATCA
TCCAGATGGTCCTAAACCTGGTCTGTGGCCTCGTGTGCTTGCTGGCTTGCTTTGTGATGTGGAAACACAG
GTACCAGGTCTTTTATGTGGGTGTTGGGCTGCGCTCCCTGATGGCTTCTGATGGCCAGCAACCAAAGGCC
TAACAGGTTGGCTCAGAGGGAGACAAGCTCAGAAACGGCACACCCACTGACTAGTCAAGGTGAAAAAAAC
CACAATTTTGTAAAGGCAAACTTTTGACAACGAATACTTTTTCATTCTCTAAATGTGTATTTTTAGATTT
TTTTTTTTTCAGAAAACAAAACAACTTGTTTTTTGGATCTCTATTGTACTTTTTAAAAACTTCTTGTGAG
GACAGGGGTGGAGAGACGGCTTACAAGTGAAGAGGACTTGCTGCTCTTTCGGAGGACTCGGGTTCAAGCT
CAGTTCCGGAGCCCAAGTTCAGTGGCTCACAGTTACCTGTACCTCCAGCTCCGGGGACATTGGGAGCACA
CGCATGCGCACACGCGTGATTTAGAGAATCTAACCTATTTTTAAAGTTCTAATGAGAAACATGATTCAAA
TTGACTTGGTGAACACCGAAAGGAAAAGAACACCAGACAGGGAAGAGATGACCTAGAGCCAGCGCTAGCT
CTGGTGCTTATCCCAGCCGCCCTTACATCCTCACCCTCCTCCGCCTTCCCGTTAGTCCAGTGCGATGGTG
TGAACTGGCATCACCCATAGACTCTAGAGTCTTCCGGCTCCTCTACCACCTGCCATTATCCCTGTGGTGT
CTTGGGAAAGGTCTAAGGAAAGCTGGATCTCAGTTGAGTGCTTTTATGTTTTCACAGTGGAGATGTCTTC
AAGGCATGAAATGGCTTTAAAAAAAAAAACTAGTTGAACAGGAAGGCTGAGTGATTCTGAACACCTGGGC
TGGGGTGCAGACTTCCGGTTGCCTTAGCTCCGATCCACGAGTGGGCTGCAGCCTCCGTGAGGTCTGATTC
ACCATAATTGAAAGGTGGTGCTGTTGCATTCTTAACGACGAGGAAAGTTTAAAAATAATTATATTATGCC
TCTAGTCTGTCATCTAAAACAAATCATTAAGACTAATTTCCAGCTAATTGTTCATTATAATTATGCTCAG
GATTCTGTTTAATGAGCTCTGGCTGTTCTTAGGCAGCACCGTTGGTGTTAGGAAAAATTACAGCCACAAG
GGAAGATGGCTGAAGATCCACTTTCCTGGAAATCAACCACTGCAAAAAATGATCTTGTAAAACATTGAAA
CACTCTCAGAGGGAAAACAACCAAGAGCATTTGTCACAGGAAATGCTTATATTAACAACACATTTTTGAT
ATTGAAAAGTATCTCCCAGTACCACCAAGTACCTTTGATGGGATTGGGTACTAAGTCCTGTCATACACAT
GGACTTCCTGGGAAATCCTAGTAATGAGGGCTTTTACAGTTGACCTAGAGACAGAATGTCTCAAAGCCCT
TGTTTGGGTGATACATCCACAGTTAGGGTATTCAGTCTCAGTTTAGACTTAAGACATGGTACTTGGTTAA
GACAGACTTTGCTATGTAATTGGGTAAAATTCCACCAAAGGAATGGGGTGGTGGCGGCACATGTCTTTAA
TCCCAGCACTTGGGAAGTAGAGGCAGGTGTATTTCTGTGAGTTGAAGGCTAGCCTGGTCTACAAAGAAAG
TTCTAGGACAGCCAGAGCAGAGAGAGAAACCCTGTCTTGAAAAAAACAAAACTAAACAAACAAAAACAAA
AAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5344514 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5344514 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7039 same embryo
 EMAGE:7041 same embryo
 EMAGE:7038 same embryo
 EMAGE:7040 same embryo
 EMAGE:7036 same embryo
 EurExpress:euxassay_002504 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS