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EMAGE:14616

Fndc3c1 fibronectin type III domain containing 3C1 ( MGI:2685630)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616
"Pseudo-wholemount" of euxassay_005491. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005491_01 euxassay_005491_02 euxassay_005491_03 euxassay_005491_04
EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616
euxassay_005491_05 euxassay_005491_06 euxassay_005491_07 euxassay_005491_08 euxassay_005491_09
EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616
euxassay_005491_10 euxassay_005491_11 euxassay_005491_12 euxassay_005491_13 euxassay_005491_14
EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616
euxassay_005491_15 euxassay_005491_16 euxassay_005491_17 euxassay_005491_18 euxassay_005491_19
EMAGE:14616 EMAGE:14616 EMAGE:14616 EMAGE:14616
euxassay_005491_20 euxassay_005491_21 euxassay_005491_22 euxassay_005491_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14616Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14616_wholemount_strong.wlz
14616_wholemount_moderate.wlz
14616_wholemount_weak.wlz
14616_wholemount_possible.wlz
14616_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14616_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9587
Entity Detected:Fndc3c1, fibronectin type III domain containing 3C1 ( MGI:2685630)
Sequence:sense strand is shown

>T9587
TGTAAAAGGCGCGGTCCCCTCCAGCCATTGGGTGCCGCATGGACCTTCTACTGCTCTCCTGTGCCTCGCG
TCCGGTGGCCTGCCCCATAGGTCCCGCCAGCTCCCTTTCTTCGCTTAGCTTCACTTGCTTGTCTTTGTAT
TTGTGACTGTTTTCCAGCCCGGTCTTTTACTTTTCTTAATCTTGAATCGGTCACTGTCGCCGGATCTCTT
GCTATCTGGAGTCAGATCGAGAAGTACCTGAATGAAGAGCGAGGCTTTTGGAGAAGCATTTTTGTATCTG
CTTAGAACTATCACTTAATGTGAAAGTCAATCCTTTTAGAGTCAATGGAACATCAACTTTCACCCATTCT
TTCTGAAATACCTCCAACAGTGCCAGTCATCAATGGAGAGCCCATGTGCCCTGTGGAGAATTATCTTCTG
GACCCTAATGCCATGGCGGTGTGTTCTAATCATTCACAGATTATGACTCAGCATAAGATGTATAACACCT
GGACGTGTCCCCAATACTGGTCTCAAATTGTATTTGTTCAAGTTAACCCTGGAGAAATCCTTACCATAAA
GGCTGATGATGGCTCCATTCAGAACATTCAAGGTCCTGCAGATGTACCTCTGATAGCACCAACTGGCAAT
TTGCCACCAATATACCTTCCTCCTGGTTACATGTCTCAGGTGGTGGAAGAAAATGGAATTCAAAAAATTG
TCATTGTACCTCAGACACTTGACTACCATGTGCCCATGACTGCTCCTGTGCAGCAGCCCTTTGTAGCAGC
ACCATTGCTCACATACCCACAGGCCCCTCAACTTCTGTATTCTCCAGTTCAAGGGGAAATCCCAGTACCT
TCTTACATACAAGAACCACAGCAGATCCCGCCACTGCCACTTCTACCCCCACTGCCACTGCTCCCACCAG
CGGCAACATTTCTATTCCAGGAACATCTTGAAACCTATCCTCAAGGAAGAGTGAATCATAACCAATTTGA
TGAGAGGACTGTAAAGATTGGAGAATATTCAAAGAAGAAGATAAGAGATCGCCAACTTGGTGAACACAAG
ATCAACTCCACTTTTAGTGACACCACTTTGCTTCTCAACAAAGACATTGACATGCCTGCTCCTCCTGATA
GTCTCTGTCCTTACACTGTGGATACTGCTCCAGGCACCAACACTGATAACAGTACTTCAGACACTTACTC
TCTGAATACTGTCTTAAACACTTGCACTATTGACAGTGCTCCAAGAAACATGGCTGACAATATTCCAGAC
ACTAACACTACTGACACAATCACTAGTTCTTCTGCTCATACCCCAAGCATTTCTACCTCAAATGCTACTT
TTTGCTCTGACAACAATAACAATATTACAGACTCTTCCATAAGTAATTACAATCAAGTCACCTATGATGA
AACTCACAAACCACCAGATGCTAAGAGTATTCCAAGCTGTACTTCCCAAAGTGCTAGCAACCCTTCTGTC
TCTGAAAATGCTCATAACCCCTCCTCGATAAATGATGGCCTCAGACCTTCTGATGTTGCCAGCATTTCTG
AAAATGATCATGAAGAGACAGAGGCTAACATGGGAGCTGGAGACAATAAGCAGATATTAGGTGAAAACCA
AAAGAAGAGTCAGTCGTCAAATGCATCACTGAAAGAACACAATACAGAGGACAGAACACAACCAGGTTGT
TTCAACATTGAAAAACCTGTGGTTTCTAATATTCAAACCCGATCTGCTACTGTTTCATGGACTCGGAAGA
GTAATGAAAAATATGATATTAATTCTTCTATGACACATGAATTGGCACTGTCCAGCAATGGTAAAAATGG
AACCTATAAAAATATTTATACTGGTAATGGCGTTACTGTGGTCCTACATGATCTACAACCTTGCATGGTC
TACTTTTTAAGAGTAACAACCATAAGAAATGCAGAACACAGAAGTGTGTCTGAAGTGGTTAGCTTCACAA
CACCAGGCTGTGAACCAGACCCTCCTCTTGCACCCACACTGATCAGCAGAACCAAGAACAGCCTGAGTTT
ACAATGGAAAGCTTCCAATGATAATGGATCCAAAATAAGCAGCTTTCTTTTGGAATGGGATGAGGGTAAA
GGTGAAGACTTCAAAAGTTGTTACAGTGGACGCCTGAAACAGCACAAGCTTTTTAAACTGAACCCTTCAA
CAAAGTATTCCTTCAGATTAGCTGCCAAAAATGACTTTGGCTGCAGCAATTTCAGTGAAACCGCAGTCTT
CTATACATCAGGAAAGACCCCTCCAGCACCACTGCCACCTAAGTTGAAAGAAGCAGGAATCTACAGTTTG
TCTCTAGAGTGGTGTGCCCCAACAAACCCAAACCCAAATGACACTCTTACTTATGTGCTAGAGATGGAGG
AAGCAAAATCTGGATTAGGTTTTAAACCTAAATACAATGGAGAAGACCTCACCTGCACCATAAGAAATCT
TCAAAGAAACACTATGTACAAGTTTCGGATTTTTGCCTACAATCTGGAAGGAAGGAGCAACCCCAGTGGA
GAAGTAAAATATACTACTCGTCCAGCTAGGCCTGGATGCCCTAATAAACCATATGTAGTGGGAACGATCC
ATGCACACCAAGTGACAATTGGATGGGACTTACCCAAAGACAACGGTGGAATGAACATCTCAAGTTACAG
CCTAGAAGTTTGTGAAAATTCAGATAGTGCGAATCTCTGGAAAATAATCTACAGTGGTACTCGACAGGAA
TTTCTGTATGATGACCTCCAAGCAGCCACCACATATAAACTGAGAGTCTTTTGCACGTCACCTGCAGGCC
AAAGCCGTCCTTCAGATGTATTGACAATTCAGACGCCTACTCTTCCTCCCGAGTCTTGCCGTTCACAGCC
CTTACGTGGTAAAACCAAGAGCAAGGATGCCAACCTTCCTGACAATCGTTCTGTTAATGGGAAGCCGGAA
GCACATGTGCGTGGCAAAAAAGCAAAAGGTCCTCATCAGGACAGAAAGGTGCACCCCAGCTCTGAAAAGA
AATGTGCACTTGGATCTCAGTCAATGGAGTGTGGATCTGTACCAGCCCGGCACCCTCCTTCTCAGTGTGG
TACACCTGTGCTAACCTGCAAGGGTCCAACCTGTGTTATTGTCAGTTGGGAAATTCCTAAATGCAATGGT
GCTGAAATCATTGATTACCGACTGCAATGGGGACAAGTTGAAGATTCCATGCATTTGATTTACACTGGCC
CTTGCTTGCGCTATGAAGTTAAAGGTCTTGTTCCTGCAACCACATACTTTTGCAGAGTACAGGCTGTGAA
TATAGTTGGGGTTGGAATGTTTGGAGGAACTGCAAAAGTGACTACACCTGGAACTGTCCCAGCAATGGTT
CCAGTATTAAAAGAAGTTGAAAGCAAAGTGCCTGCCAAGCTGTCATCAACTTGCATAGCTATCCGCTGGG
AGGAGCCAGACTGTCATGGCTCTCCTATCACTGGATATAACATTGAATATGGAGATAAAAAAGTTGTGAC
TGTCAAAAGAATAACCGAGTATGTTCTGAAAGATCTACAACCTAATACTACATACAGAATCAGAATTCAA
GCTATCAATCATTATGGACTAAGCCCTTTTAGCCCATCAATAAGATGCAAAACCAAACCACTACCACCAG
AGCCTCCACAGCTTAATTGTGTGGTCTATGGACACCAGAGTCTCAGACTCAAATGGGGCACTGTCTCAAG
CAAAAAAACACTTGCCAATTTTATCAACTACAACGTACTAATGGAAGATCGATCTGGCAGATTTTCTGTC
ATTTACCGTGGGCCGGATGTGACTCACAAAGTGCAAAAATTGAGTGAGTATACAGAATACAAGTTTAAAA
TCCAGGCATGTAATGAAGCTGGGGAAGGACCAGAGTCTGACATCTACACTTTCACTACTACAAAGTCCCC
ACCCACTGCACTGAAAGCACCAAAAGTACATCCACTGAATAACAACTCTTGTGAGATCAAATGGGAGTCT
TTGGAGCCAATTAAAGGTGATCCCATTGTTTATTGTCTTCAAGTCACCACCGGGAAAAAGGCTAATCAGA
TTTACAAAGGACCAAACACTTCCTTTTCCTTTTCCAACTATCATGCAAATTCACGCTACCGCTTCAAGGT
CTGTGCAGGACGCCGATATGAAACCTCCAATGGTCTTCAAGAGCTGTGGGGGCCATATAGTCCCAGTGCT
CTTTTCTCAACTTATAAGCATCATTCAGGGCATGGCAAAGGCAGTGGGAGTAAAGGAAAAGGCAACCATA
ATGACAAAGGTGAAAAGTGCAAGACAGAGATGAGTGATGATACCTTCGTTCTTACCCTTCTGATAGGGTT
CGCACTTATTGCAGTTTTGTGTGCTGTTGCCGTTCAATACCTCCTGATCAATTAGTCTGTTCTTTTAGGG
AAAAAAGGAAATTATATCTGGTTTAGAAAACTTTAGATACATCTTAATGCACATGCTTATATTTAAGGCT
TATTGATAGAAAGTAGTAACAGAAAAAAACAAAACACTATCTTCATTTTTACAAACTTTTGTGACAGTAG
AACAGAGATTTCTAAGGAAACATATGTACCATAAATTTTACTATTTTCATTGTTCTGTGAAAAAAACATT
GCCTTCTTATGTAAAATTCAGTCATCTGTGGAAACTATTTTCTGCCTTTACTTGTCAAGTTAATATTTTC
AAAAAATTTTATGACTATGATATAACAACAGTATTTTGGAATTTTTTTAGAACAAAATAAGAAATATTGC
TTCTGTCTGTCCTGTTAATGTCCATATGAAGTAATAAAAAATGTATCTACAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30641582 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30641582 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14617 same embryo
 EMAGE:14618 same embryo
 EMAGE:14619 same embryo
 EMAGE:14620 same embryo
 EurExpress:euxassay_005491 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS