EMAGE mouse gene expression spatial database

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EMAGE:14808

Snrnp200 small nuclear ribonucleoprotein 200 (U5) ( MGI:2444401)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005762. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005762_01	euxassay_005762_02	euxassay_005762_03	euxassay_005762_04

euxassay_005762_05	euxassay_005762_06	euxassay_005762_07	euxassay_005762_08	euxassay_005762_09

euxassay_005762_10	euxassay_005762_11	euxassay_005762_12	euxassay_005762_13	euxassay_005762_14

euxassay_005762_15	euxassay_005762_16	euxassay_005762_17	euxassay_005762_18	euxassay_005762_19

euxassay_005762_20	euxassay_005762_21	euxassay_005762_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14808_wholemount_strong.wlz

14808_wholemount_moderate.wlz

14808_wholemount_weak.wlz

14808_wholemount_possible.wlz

14808_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14808_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8788
Entity Detected:	Snrnp200, small nuclear ribonucleoprotein 200 (U5) ( MGI:2444401)
Sequence:	sense strand is shown >T8788 GCGTTGTACCTGTTGTGCCAGGGCGGTTCGCTGAAGCGGTTCGGAGCGTGAAGAAGAGTGGAACCCTGAG TTCCCGGAGCATCAGCAGCCATGGCGGATGTGACTGCCCGCAGTTTGCAGTACGAGTACAAGGCGAACTC AAATCTTGTGCTCCAAGCTGACCGCTCTCTCATTGACCGGACCCGCCGGGATGAACCGACGGGAGAGGTT CTGTCCCTGGTTGGGAAGTTGGAGGGAACCCGAATGGGAGATAAGGCTCAACGGACCAAACCACAGATGC AGGAAGAAAGACGGGCCAAGAGGAGAAAACGTGATGAGGACCGGCATGACATGAACAAGATGAAAGGCTA CACGCTGCTGTCTGAGGGCATTGATGAGATGGTGGGCATCATCTACAAGCCTAAGACGAAGGAGACCCGA GAGACCTACGAGGTGCTGCTCAGCTTCATCCAGGCTGCGCTGGGAGATCAGCCTCGAGATATTCTTTGTG GAGCAGCTGATGAAGTCCTTGCTGTGCTGAAGAATGAAAAGCTTCGAGACAAGGAGAGAAGACGGGAGAT TGACCTGCTGCTGGGTCAGACAGATGATACCAGATACCATGTGCTGGTAAACCTGGGCAAGAAGATCACA GACTACGGTGGCGACAAGGAGATACAGAATATGGATGACAACATTGATGAGACTTATGGTGTGAACGTGC AGTTTGAGTCTGATGAGGAGGAAGGTGATGAAGATGTGTATGGGGAAGTCCGAGAAGAAGCTTCTGATGA TGACATGGAAGGGGACGAAGCTGTTGTGCGCTGCACCCTCTCTGCTAATCTTGTAGCCTCAGGCGAACTG ATGAGTTCTAAGAAGAAGGATTTGCACCCTCGGGATATCGATGCCTTCTGGCTGCAGCGACAGCTCAGTC GTTTCTATGATGATGCCATTGTGTCACAGAAGAAGGCAGATGAGGTGTTGGAGATTTTGAAGACAGCAAG TGATGACCGAGAATGTGAGAACCAACTGGTTTTGCTCCTTGGTTTCAACACGTTTGACTTCATTAAAGTG TTGCGGCAGCACAGGATGATGATTTTATACTGTACCTTGTTGGCCAGTGCTCAGAGTGAACCTGAAAAGG AGAGGATCGTGGGAAAGATGGAAGCTGATCCAGAGCTCTCCAAGTTCCTCTATCAGCTCCATGAGACTGA GAAGGAGGACCTGATCAGAGAAGAAAGGTCCCGGAGAGAGAGAGTCCGTCAGTCCCGAATGGACACAGAT CTGGAAACCATGGATTTGGACCAGGGTGGAGAGGCTCTGGCTCCAAGGCAGGTTCTGGATTTGGAGGACC TTGTTTTTACCCAAGGAAGCCACTTCATGGCCAATAAGCGCTGCCAGCTTCCTGACGGGTCCTTCCGACG CCAGCGTAAAGGCTATGAAGAGGTGCATGTGCCTGCTTTGAAGCCCAAGCCCTTTGGCTCAGAAGAACAA TTGCTCCCGGTGGAGAAGCTGCCAAAGTATGCCCAGGCAGGATTTGAGGGCTTCAAAACGCTGAACCGGA TCCAGAGTAAGCTCTACCGTGCTGCCCTGGAGACTGATGAGAACCTGCTGCTGTGTGCTCCCACTGGTGC GGGCAAGACCAACGTGGCCCTGATGTGTATGCTCCGAGAGATAGGGAAACACATCAACATGGACGGCACA ATCAATGTGGATGACTTCAAGATCATCTACATAGCTCCCATGCGGTCCCTGGTCCAGGAGATGGTGGGCA GTTTTGGAAAGCGCCTGGCCACATATGGCATCACTGTTGCTGAGCTGACTGGGGATCACCAGCTATGCAA GGAGGAAATCAGTGCCACACAGATTATCGTCTGCACCCCTGAGAAGTGGGACATCATCACACGCAAGGGC GGGGAGCGCACCTACACCCAGCTGGTGCGACTCATTGTCTTGGATGAGATCCATCTTCTACATGATGACA GAGGTCCTGTCTTAGAAGCTTTGGTGGCCAGGGCCATCCGAAACATTGAGATGACCCAAGAAGATGTCCG ACTCATTGGTCTCAGTGCTACCCTCCCCAACTATGAAGATGTGGCCACCTTTCTGCGAGTCGACCCTGCT AAGGGCCTCTTCTACTTTGATAACAGCTTCCGCCCCGTGCCTCTGGAACAAACATATGTGGGCATCACAG AGAAAAAAGCTATCAAACGTTTCCAGATCATGAATGAAATAGTCTATGAGAAAATCATGGAACATGCTGG AAAAAATCAGGTGCTCGTGTTTGTCCATTCTCGAAAAGAAACTGGGAAGACAGCAAGGGCAATCCGTGAC ATGTGTCTGGAGAAGGACACTTTGGGTCTGTTTCTTCGCGAGGGTTCTGCCTCCACTGAAGTCCTTCGTA CAGAAGCAGAGCAGTGCAAGAACTTGGAGCTGAAGGATCTTTTGCCCTATGGCTTTGCTATTCATCATGC AGGCATGACTAGAGTTGACCGAACACTTGTAGAAGATCTTTTTGCTGACAAGCATATTCAGGTTTTAGTT TCCACCGCAACTCTGGCGTGGGGTGTAAATCTTCCTGCACATACAGTCATCATTAAAGGTACCCAAGTGT ACAGTCCAGAGAAGGGGCGTTGGACAGAGCTGGGAGCACTGGATATCCTGCAGATGCTGGGCCGTGCTGG ACGGCCGCAGTATGACACCAAGGGTGAAGGCATCCTCATCACATCCCATGGGGAGCTCCAGTACTACCTC TCCCTCCTCAACCAGCAGCTGCCTATCGAGAGCCAGATGGTCTCCAAGCTGCCTGACATGCTCAATGCGG AAATTGTTCTGGGCAATGTCCAGAATGCAAAGGATGCAGTGAACTGGCTGGGCTATGCCTACCTATACAT CCGAATGCTCCGGTCCCCTACCCTCTATGGCATTTCTCATGATGACCTCAAGGGAGATCCCTTGCTGGAC CAGCGCCGACTCGATCTTGTTCACACTGCTGCCTTGATGCTGGACAAGAACAATCTGGTCAAGTACGACA AGAAGACAGGCAACTTCCAGGTGACAGAACTTGGCCGGATAGCAAGTCACTACTATATCACCAATGATAC TGTGCAGACCTACAACCAGCTGCTGAAGCCTACTCTGAGTGAGATTGAGCTTTTCCGAGTGTTCTCCTTG TCCTCAGAGTTCAAGAACATCACTGTAAGAGAGGAGGAGAAGCTGGAGCTGCAGAAGTTGCTGGAGAGAG TGCCCATCCCTGTAAAGGAGAGCATTGAGGAACCCAGCGCTAAGATCAACGTGCTTCTCCAAGCCTTCAT CTCACAGCTGAAACTCGAAGGCTTTGCGCTGATGGCTGACATGGTGTATGTGACCCAGTCGGCTGGCCGG TTGATGCGTGCAATCTTCGAAATTGTCCTGAACCGAGGTTGGGCACAGCTTACAGATAAGACCCTGAATC TCTGCAAGATGATTGACAAGCGCATGTGGCAGTCCATGTGTCCTCTTCGCCAGTTCCGAAAACTTCCTGA GGAAGTAGTGAAGAAGATTGAGAAGAAAAACTTCCCCTTTGAGCGGCTGTATGACTTGAATCATAATGAG ATAGGTGAACTTATTCGAATGCCGAAGATGGGGAAGACCATCCACAAGTATGTCCATCTTTTCCCCAAGT TGGAGTTGTCAGTGCACCTGCAGCCTATTACACGCTCTACGCTGAAAGTAGAGCTGACTATCACACCAGA TTTCCAGTGGGATGAAAAGGTCCATGGTTCGTCAGAGGCATTTTGGATTCTGGTGGAGGATGTGGACAGT GAGGTGATTCTGCACCATGAATATTTTCTGCTGAAGGCCAAGTATGCCCAGGATGAGCACCTCATCACGT TCTTTGTTCCAGTCTTTGAACCACTACCTCCTCAGTACTTCATTCGAGTAGTGTCTGATCGCTGGCTCTC TTGTGAGACGCAGCTACCTGTCTCCTTCCGGCATCTGATCCTACCAGAGAAGTACCCACCTCCAACCGAA CTGTTGGACCTGCAGCCATTGCCTGTGTCTGCTCTGAGAAACAGTGCTTTTGAGAGCCTTTACCAAGATA AATTTCCTTTCTTCAATCCCATCCAGACTCAAGTATTTAATACCGTGTACAACAGTGATGATAACGTGTT TGTGGGGGCCCCCACGGGCAGCGGGAAGACTATCTGCGCGGAGTTTGCCATCCTTCGGATGCTGCTGCAG AATTCTGAGGGACGCTGTGTCTACATTACCCCTATGGAGGCTCTGGCAGAGCAGGTATACATGGACTGGT ATGAGAAGTTTCAGGACAGGCTCAACAAGAAGGTAGTGCTGCTGACGGGGGAGACCAGCACAGATCTGAA GCTCCTGGGCAAAGGCAACATCATCATCAGTACCCCTGAGAAGTGGGACATCCTCTCTCGGAGGTGGAAG CAGCGCAAGAACGTCCAGAACATTAACCTCTTTGTGGTGGATGAGGTCCACCTTATTGGGGGCGAGAATG GGCCTGTCTTGGAAGTGATCTGCTCCCGGATGCGCTACATCTCCTCCCAGATTGAGCGGCCCATTCGCAT TGTGGCACTTAGCTCCTCACTCTCCAATGCCAAGGATGTGGCTCACTGGCTGGGCTGCAGTGCCACCTCC ACCTTCAACTTCCATCCTAATGTGCGCCCTGTACCTTTGGAACTGCACATCCAGGGCTTCAACATCAGTC ACACACAGACTCGCCTGCTCTCTATGGCCAAGCCTGTGTACCATGCTATCACCAAACACTCACCCAAGAA GCCTGTCATCGTTTTTGTCCCATCTCGTAAGCAGACCCGCCTCACTGCAATAGACATCCTCACTACCTGT GCAGCAGACATCCAGCGGCAGAGGTTCCTGCACTGCACCGAGAAGGACCTGATCCCTTACCTGGAGAAGC TCAGTGACAGCACACTCAAAGAGACCCTGTTAAATGGGGTGGGCTACCTGCATGAAGGCCTGAGCCCCAT GGAGAGGCGCCTGGTAGAGCAGCTCTTCAGCTCCGGGGCTATCCAGGTGGTGGTAGCTTCTCGGAGTCTC TGCTGGGGCATGAATGTTGCTGCTCATCTAGTGATCATCATGGATACTCAGTACTACAATGGCAAGATCC ATGCCTATGTGGATTACCCCATCTATGATGTGCTTCAGATGGTGGGCCATGCCAACCGGCCCCTGCAGGA TGATGAGGGGCGCTGTGTCATCATGTGTCAGGGCTCTAAAAAGGATTTTTTCAAAAAATTTTTGTATGAG CCATTGCCAGTAGAGTCTCACCTGGACCACTGTATGCATGACCACTTCAATGCTGAGATTGTCACCAAGA CCATTGAGAACAAGCAGGATGCTGTGGACTACCTCACCTGGACCTTTCTGTATCGCAGAATGACACAGAA CCCCAATTACTACAACCTGCAGGGGATATCCCATCGTCATCTGTCTGACCACCTGTCAGAGCTGGTGGAG CAGACCCTCAGTGACCTGGAGCAGTCCAAATGCATCAGTATTGAGGACGAGATGGATGTGGCCCCTCTGA ACCTGGGCATGATTGCTGCCTACTATTACATAAACTACACCACCATTGAGCTCTTCAGCATGTCTCTGAA TGCTAAAACCAAGGTTCGAGGACTTATTGAGATCATTTCCAATGCAGCAGAGTATGAGAACATTCCAATC AGGCATCATGAAGACAACCTCCTGCGCCAGTTGGCTCAGAAGGTCCCCCACAAGCTGAATAACCCCAAGT TCAATGATCCACATGTGAAGACCAATCTGCTGCTGCAGGCTCACCTGTCCCGCATGCAGCTAAGTGCTGA ACTACAGTCAGACACAGAGGAGATCCTTAGTAAGGCAATCCGGCTAATTCAGGCCTGTGTGGATGTACTC TCCAGCAATGGGTGGCTTAGTCCTGCTCTGGCAGCCATGGAACTGGCCCAGATGGTCACCCAAGCCATGT GGTCTAAGGACTCTTACCTGAAGCAGCTGCCACACTTCACCTCAGAGCATATCAAACGTTGCACAGATAA GGGAGTGGAGAGTGTTTTTGACATCATGGAGATGGAGGATGAAGAACGGAATGCATTGCTTCAGTTGACT GACAGCCAGATTGCAGATGTGGCCCGCTTCTGTAACCGCTACCCGAATATTGAACTGTCCTATGAAGTGG TGGATAAAGACAGCATCCGCAGTGGCGGACCAGTTGTGGTGCTAGTGCAACTGGAGCGAGAGGAGGAAGT CACGGGCCCAGTTATTGCACCTCTCTTCCCACAGAAACGTGAAGAGGGCTGGTGGGTTGTGATTGGAGAC GCCAAGTCCAACAGCCTCATCTCCATCAAGAGGCTGACCCTGCAGCAGAAAGCCAAGGTGAAGCTAGACT TTGTGGCCCCAGCCACAGGTGGCCACAACTATACCCTGTACTTCATGAGTGACGCATACATGGGCTGTGA CCAGGAGTATAAGTTCAGTGTGGATGTGAAAGAAGCTGAGACAGACAGTGATTCAGATTGAGTCTGAGGC ACTGAACCTGAAAACAGGAATGTGGACTAGGTCTGTCAGGCTGAGGTCTGGCCATTCAGGCCGCTGCTGT CCCCAGTCCACATCCAGTTACTGTCCCACTTTGGACCTTAGTTCAAGGTCTGGGTCTTGTATTTTCAAGT GTCATGTCAAGCATGAACTGTACAATATTTGGAGGCATGGTTTTCTAGTTCCTTGAGTCAGACATTCTAA TAAATAATTTGAAAAAACTAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6408607 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6408607 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14812 same embryo
	EMAGE:14811 same embryo
	EMAGE:14809 same embryo
	EMAGE:14810 same embryo
	EMAGE:14813 same embryo
	EurExpress:euxassay_005762 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source