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EMAGE:14811

Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like ( MGI:1921642)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14811 EMAGE:14811 EMAGE:14811 EMAGE:14811 EMAGE:14811
"Pseudo-wholemount" of euxassay_005756. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005756_01 euxassay_005756_02 euxassay_005756_03 euxassay_005756_04
EMAGE:14811 EMAGE:14811 EMAGE:14811 EMAGE:14811 EMAGE:14811
euxassay_005756_05 euxassay_005756_06 euxassay_005756_07 euxassay_005756_08 euxassay_005756_09
EMAGE:14811 EMAGE:14811 EMAGE:14811 EMAGE:14811 EMAGE:14811
euxassay_005756_10 euxassay_005756_11 euxassay_005756_12 euxassay_005756_13 euxassay_005756_14
EMAGE:14811 EMAGE:14811 EMAGE:14811 EMAGE:14811 EMAGE:14811
euxassay_005756_15 euxassay_005756_16 euxassay_005756_17 euxassay_005756_18 euxassay_005756_19
EMAGE:14811 EMAGE:14811 EMAGE:14811
euxassay_005756_20 euxassay_005756_21 euxassay_005756_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14811Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14811_wholemount_strong.wlz
14811_wholemount_moderate.wlz
14811_wholemount_weak.wlz
14811_wholemount_possible.wlz
14811_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14811_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8789
Entity Detected:Specc1l, sperm antigen with calponin homology and coiled-coil domains 1-like ( MGI:1921642)
Sequence:sense strand is shown

>T8789
GCATCACCAAGAGGCAGCCCAGAATGAAGAAAGCAAACAGGAGTGCTGGCTCAGTGCCTAAGGTGTCTGG
GATAAGCAAACCGCAAACAGTAGAGAAAAGCAAGCCTGAGAACAGCTCTTCAGCACCCACAGGAGTCAAG
CCTGTGAGGCCTGGGGCAGCAGCAGCCTTGTCAAAGACCAAGAGCAATGATGACCTTTTAGCTGGAATGG
CTGGAGGAGTAAACGTGACTAATGGTATTAAAGCAAAGAAAAGCACCTGTTCATCTGCAGCGCCTTCAGC
CCCCGCCCCTGCCATGACCATCTCGGAGAACAAGTCCAAGATCAGCACAGGCACTAGTTCCTCAGCCAAA
CGGAGTACTTCGGCTGGTAATAAAGAGTCCAGTTCTACTAGAGAAAGATTACGTGAACGCACCCGGCTAA
ACCAGAGCAAAAAACTGCCCTCTGTAAGTCAGGGAGCTAATGATGTGGCACTGGCTAAACGTTCACGCAG
CCGCACTGCTGCAGAGGGTGATATTCGTATGAGCAAGTCTAAGTCGGACAATCAGATCAGTGACAAAGCT
GCTTTGGAAGCCAAGGTGAAAGATCTCCTCACACTGGCGAAAACCAAGGATGTGGAAATTTTACATTTGA
GAAATGAACTCCGAGACATGCGTGCTCAGCTGGGCATTAGTGAGGACCATTGTGAAGGTGAGGACAGGTC
TGAGGTGAAGGAAACTATTATTGCTCACCAGCCTACTGACGTGGAGTCTACTCTCCTGCAGCTGCAGGAG
CAGAATACAGCCATCCGCGAGGAGCTCAACCAGCTGAAGAATGAAAACAGAATGCTAAAGGACAGGCTCA
ATGCTTTGGGCTTTTCCCTAGAGCAAAGGCTGGACAATTCTGAAAAACTATTTGGCTATCAGTCCCTGAG
CCCAGAAATCACCCCTGGTAACCAGAGTGACGGAGGAGGAACTCTGACATCTTCGGTAGAAGGTTCTGCT
CCTGGGTCGGTGGAAGATCTCCTGAGTCAGGATGAAAATACACTCATGGACCATCAGCACAGTAACTCCA
TGGACAACCTGGACAGTGAGTGCAGCGAGGTGTACCAGCCCCTCACTTCCAGCGATGATGCTCTGGACGC
CCCCTCCTCTTCAGAGTCAGAGGGCGTGCCAAGCATTGAGCGCTCTCGGAAGGGGAGCAGTGGGAATGCC
AGTGAGGTGTCCGTCGCTTGCCTGACAGAACGGATTCACCAGATGGAAGAGAACCAGCACAGCACCAGTG
AGGAGCTTCAGGCCACTCTACAGGAGCTGGCTGATCTCCAGCAGATTACCCAGGAGCTCAACAGTGAGAA
CGAAAGGCTGGGAGAGGAGAAGGTCATTCTGATGGAGTCGCTGTGTCAGCAGAGTGATAAGTTGGAACAC
TTTGGCCGGCAGATTGAGTATTTCCGTTCCCTTCTTGATGAGCATCACATTTCCTATGTCATAGATGAAG
ACGTAAAGAGCGGGCGCTATATGGAACTAGAGCAGCGCTACATGGATTTGGCTGAGAATGCCCGTTTTGA
GCGAGAGCAGCTTCTAGGTGTGCAGCAGCATTTAAGCAACACTTTGAAGATGGCAGAACAAGATAACAAA
GAAGCTCAAGAAATGATAGGTGCCCTCAAAGAGCGCAGCCACCACATGGAGCGGATTATTGAGTCTGAGC
AGAAGGGCAAAGCGGCCCTGGCAGCCACATTGGAGGAGTATAAAGCTACTGTGGCCAGTGACCAGATAGA
GATGAATCGCTTGAAGGCCCAGCTGGAGAACGAAAAGCAGAAGGTGGCTGAGTTGTATTCTATCCATAAC
TCTGGAGACAAGTCCGATATCCAGGATCTCCTGGAGAGTGTCAGGCTGGACAAGGAAAAGGCGGAGACTT
TGGCCAGTAGCCTGCAGGAAGATCTGGCTCATACCCGAAATGATGCCAATCGGTTACAGGACACCATTGC
TAAGGTAGAAGATGAATACCGAGCTTTCCAGGAAGAGGCCAAGAAGCAGATTGAAGATTTGAATATGACA
TTAGAAAAACTAAGATCAGAGTTGGAGGAAAAGGACACGGAGAGGAGTGACATGAAGGAAACCATCTTTG
AACTTGAAGATGAGGTGGAGCAGCACCGCGCCGTGAAGCTGCATGACAACCTCATTATCTCTGATCTAGA
GAATACAGTTAAGAAACTCCAAGACCAAAAGCATGACATGGAAAGAGAAATCAAGACACTTCACAGGAGA
CTTCGGGAAGAGTCTGCAGAATGGCGGCAATTTCAGGCTGATCTCCAGACTGCAGTGGTCATTGCCAATG
ATATCAAGTCTGAAGCCCAAGAAGAGATCGGTGATCTAAAGCGACGGCTACATGAGGCCCAAGAGAAAAA
TGAGAAACTCACAAAAGAATTGGAGGAAATAAAGTCACGCAAGCAAGAGGAAGAGCGTGGCCGGGTGTAT
AACTACATGAATGCTGTTGAAAGAGATTTGGCAGCCTTGAGGCAAGGGATGGGACTGAGTAGAAGGTCCT
CCACTTCCTCAGAACCAACTCCCACAGTAAAAACCCTCATCAAGTCTTTCGACAGTGCATCTCAAGTACC
AAACGCTGCTGCAGCTGCGATCCCTCGAACACCTCTGAGTCCAAGTCCCATGAAAACCCCTCCTGCAGCT
GCCGTTTCTCCCATGCAGAGACATTCCATAAGTGGTCCAATCTCAACCTCCAAGCCTCTGACAGCCTTGT
CAGATAAGAGATCAAACTATGGAGAGCTTCCTGTACAAGAGCATCTACTAAGAACATCTTCAACCAGCCG
GCCCGCCTCTCTCCCAAGAGTCCCTGCTATGGAAAGTGCCAAGACCATCTCAGTGTCTCGACGGAGTAGT
GAAGAAATGAAACGGGACATCTCTGCATCTGAGGGCGCGTCACCAGCCTCTCTCATGGCTATGGGCACCA
CGTCACCACAGCTCTCCCTCTCTTCCTCTCCCACTGCATCTGTCACTCCAAGCACCCGGAGCCGAATAAG
GGAAGAAAGGAAAGACCCCCTCTCAGCATTGGCAAGAGAATATGGAGGCTCCAAGAGGAACGCCTTGTTG
AAGTGGTGTCAGAAGAAAACAGAAGGCTATCAGAATATTGACATCACAAACTTCAGCAGCAGCTGGAACG
ACGGGCTGGCTTTCTGCGCATTGCTTCATACCTATCTCCCAGCCCACATACCATATCAAGAACTGAACAG
TCAAGATAAGAAAAGGAACTTCACCCTGGCTTTCCAGGCAGCTGAAAGTGTTGGAATCAAATCGACGCTG
GACATCAATGAAATGGCGCGTACTGAACGGCCCGACTGGCAGAACGTCATGCTGTATGTTACAGCCATCT
ACAAGTACTTTGAAACCTGAGCACACAGGAGCGGCTGATACCAGCTAGGGACCTCTGCAGTCACCAAGTG
ACACCAACACCATTAGCTAGAACTCCTAAAGCTTTCAGTGACTCTGGGTCTCCCTGCAGGGAGTGTGCCC
AGCTCTAGGCCTCTGCATTGGAACTGGAACTGCAGGCCAGGGCTCTTCCGCATGGCCGTCCTCAGGAGCA
GAAGTACAGCACACCGCCAGCCTACTTCCAGAGACCGTCCGGCTCCACCAGGGCCCTGGAGTGCAAACAG
CATAAAGGCTGTGCCCGGCCGGGCTTATCTTGGGAAATGGGATTAAGTTGTGGGAACCATGGGTTAGTGA
AAGCTTTAGCCATCCAACTTCTTGACTATTATCCACGTGATTCCCAGTGGTGGGACAGAGCTGGCTTTGG
TCCCTTCATGTGGGCCTGGGTTCTAGGAGTGTGTCAGAGGAAAGTGTCAGTACCCGTTCCATGGAGAGGA
CCGTCCTAACCACTGCACTTAGCTTAGGAGTGTTAAAACCCTGCTTATAGGCCCACAGCTCGTTGAGTCT
ACACTGCCACCAAGTAGGTTTTTGTCAGCAGCAAGACGCAGGTGGCACACTCAGTGGGTGCTCAGCCACT
TGCCTGTAACACCAGGGAAAAGACTGGTCACAAGGAGTTCTCCTCATTGAAGTTGTTGTTTTATTATAAG
CAATATTGGTGAAATAGCTCCTGTTAGTACCAAAGTTAATCGTTTCAGTAAGCATAGAACTAAAACACAG
ACTGGGCATTAGCATGTGAGAGGGAGGGTTCGTGCAGTAGGGAAAGGGGGGTGCTTTAGGGAGCCAGAGA
TTCAAGTTGTACTGGTGGCTGCCCCTCCAGGGCAGGAGTTAAGACAGTGCCTTAGCCCTGCACCAGGACA
GCTGAGCCTACACCCACATGAGGATCCTGTGTGCTGATTGGGACTCCAGGAGAAGTGGCTCTACGCTGTG
CCTGGGCTGTGGGGCCTATATCACGAGCCAAGGCCTTACCCGGTTTGTTGATTTCTGGCTGGAATTTAGC
AGCCTCTTTTCGAGAATAGGAAGCCCTTATTTCATGTGCCTGACACAGAAGCTGTTGTTTGAACAATGTC
AAGACCTGTTGCTCCGGGATACACTTGTTTGTCACCTGCAAGGCACCATGTGGAAGACTGGCCATCAATA
AAAATGGGGCCACAGCTTCAGTAACAAGATGGATGGTGGGAATGTCTCCCAGGAGGCATGCCAGGCCAAA
CATGGACTGAGTGAGGTTCTGTATTCAAGCATAATGCTACAGACTAGGAATCTGTTGTATCTATGGAACG
TAGAGAAGGAAGCAATTTGAAAGTAGTTATTGGGAAGTGGGCCGTGTCTGTTTGTGTTGCCATCAGATGG
CCAGTCCCACCCCTCCACCCTGCTTAAATGTCCCAATCTGGCAGCTTATGCTGCAGAGTGTACCAGGAGA
CCCTATTATTCTGTCTGCCCAGTGCCTCTCTGGCCCTCCTTGGCCCAGTTCTGTTCTTGTTCTTGTTCTG
CTGATGAACTCCGTTGGGGTGACCATTGTGTGAAAATGACTGTTTCCAAATGAGTCTCCACTGAACTCCT
CTGAGCTTCCAGCCTCTGCTGTATTTGCCTTCACTGAGGCCTTCCACTGTGCACCAAGGTGGTGGATCTG
AGGCCAGGTTTTATTTATTATCATGAAAAGGGGTTGTCTTGTTAGAGACTTTCCTGGGCTTGCAGTTCAC
ACCTTCTGTCCCCTGCTGGCTATGTGATCCTCATGGCAGTGTGGAAGTTGCCCGAGTTTTCTGAAAGGAT
TTGGAGTAAGTCAGCTGCTGCTGAACGAGTATGTCCATGTAGAGGTAACATTCTGTTTTGGAATCTGTGG
GCCTGGGCTAGGCCTGGAGCCAGTGCAGGGACAGACAGATGGTGGGCTAGACCCTCTCACATGCACACAC
AGACTGGGTGTCTCACAGCCAGGGCCAGGCTGCCCACATTTGTGTGAGGGTCCACAGTCAAGTGCTGTCT
TCAGACCACTGCTTTTTGCCTTCTCTAATAGGCCACTAAAGAGCACTGTTGACCCTCTGGGCATGCTTGT
AGATGGCCATGTGCTATTAAAAGTAGTATTTGGGAGTTCTTAGAGTGCCTGTCTACAATGCACGAAGCCC
TGGGTTGATCCCTACCACCACATACACTGAGTGTGGTGCATACCTGTCATTCTAGTACTTGGGGAAACGG
AGGCAGGAGGATCATGAGTTCAGTGTTACTGTTGATTACACGGTGAGTTTGATGTCAGCCCTGGCATGTG
AGACCCTGTCCGCCAAAAGGTGATATTTGGAGGTTTTCTTGTTCTGGGGCTGTTTCCTGGGAAGCTCTAA
GATGTAAGCTCGCCTCTTCCTAAAGCACAAGCTTCGCTACAAAAGGGCCAGCTACCTTTCTACTGTTGTC
AGTCACAGGCTTCTGCCGATGAATGACACTTTGTCATTTTGTTCTAGTAAATACTCTTGAATGTAATAAA
CTGTCATGCGTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6408832 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6408832 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14812 same embryo
 EMAGE:14809 same embryo
 EMAGE:14808 same embryo
 EMAGE:14810 same embryo
 EMAGE:14813 same embryo
 EurExpress:euxassay_005756 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS