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EMAGE:14809

Bhlha9 basic helix-loop-helix family, member a9 ( MGI:2444198)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14809
euxassay_005758_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14809Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14809_wholemount_moderate.wlz
14809_wholemount_weak.wlz
14809_wholemount_possible.wlz
14809_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14809_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7898
Entity Detected:Bhlha9, basic helix-loop-helix family, member a9 ( MGI:2444198)
Sequence:sense strand is shown

>T7898
GCCAGCAAGAGCCATCAGTCAGTGGACCAGCAGCCTTTTGGACCCAAATAGCTGAAGCTGTGAGACCAGG
ACATAGGCCATGCTCCGAGGCACGCCAGGACTAGGCCTCGGGGGCCTGAACCGGGCTGAGGATTTTGTGG
AGGACTTGGGGCGCTCCTGCTCGGAGGCTGGCAGGAATTTTGGAGTGCTGAGGAGGAGCAGCTTGGACGA
GGCAGAAGAGGCAGCTGGCAGAAAGCGCGAGCGGCCCACACGGTCCAAGGCTCGGCGCATGGCGGCTAAC
GTGCGGGAGCGCAAGCGCATCCTGGATTACAACGAGGCGTTCAACGCGCTCCGCCGGGCGCTGCAGCATG
ACCTCGGAGGCAAGAGGCTCTCCAAGATCGCTACGCTGCGCAGGGCCATCCACCGCATCACTGCTCTATC
CTTGGTCCTGCGTGCCAGTCCGGCGCCCCGCTGGCCCTGCGGACACCTGGAGTGTCACGGCCAGGCTGCC
CAAGGCTCGAGCACGGGGAATTCCAGCTTCAGTGTTCCGCGGTCAGCGCCGTCTCCTATAGCGCCTAGCC
TAACGCGCAGGGACATCGCCAGCCCCTTAGTGCCGCCTACACCGCGCTGCGCTTCGTGTTCCCCGCACTC
GCACTTGGGGCGGCCTAGGGTGATGGCCGAAGTGCCCAATTTGGCCCAAACCTCCGGGGGAAACTGGCGT
CAATGTCCTGGGGCTCCCCCTGTTCGACCGGTTTCGTGGCGGTGGGGTTCTGGGCTGGGCTACCAGCACT
CTTGATCGTGCCACCCAGAGGGAAGCCGGCTTGGCCCGAGTGACTGCAAAAGAGAAGATGGCAGAAGTCA
TCCTGGACAGAGCAAAATTGAATGGGGTTGTGACTTGCGTGGCAAAGGAGGATGTCTTACCATGGGAAGG
AACTACCGGGCTCAGGGCAGCCTTCCCACATCCCAGCCTGGGGTGGTGAAAAAGAAGGGAGATTTTAGGT
TTGGACTTGGTCAACCCCTTGTTCCTGGAAAGTGGCCTTTGCTTTCCTTTGCTTCTGAGCCCTCCTTTTC
CCTTGCCGCCTTTGGAAAGTGGGACTTGTGGGACTGTGTGGGTAGGCAGCTGCTATGATCTGAGGGCATA
TGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAGAGAAGCCCAGAAAATGATCAAATAAAA
AGGAAACATGTCTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6510150 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6510150 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14812 same embryo
 EMAGE:14811 same embryo
 EMAGE:14808 same embryo
 EMAGE:14810 same embryo
 EMAGE:14813 same embryo
 EurExpress:euxassay_005758 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS