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EMAGE:17121

Fndc4 fibronectin type III domain containing 4 ( MGI:1917195)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17121 EMAGE:17121 EMAGE:17121 EMAGE:17121 EMAGE:17121
"Pseudo-wholemount" of euxassay_001509. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001509_01 euxassay_001509_02 euxassay_001509_03 euxassay_001509_04
EMAGE:17121 EMAGE:17121 EMAGE:17121 EMAGE:17121 EMAGE:17121
euxassay_001509_05 euxassay_001509_06 euxassay_001509_07 euxassay_001509_08 euxassay_001509_09
EMAGE:17121 EMAGE:17121 EMAGE:17121 EMAGE:17121 EMAGE:17121
euxassay_001509_10 euxassay_001509_11 euxassay_001509_12 euxassay_001509_13 euxassay_001509_14
EMAGE:17121 EMAGE:17121 EMAGE:17121 EMAGE:17121 EMAGE:17121
euxassay_001509_15 euxassay_001509_16 euxassay_001509_17 euxassay_001509_18 euxassay_001509_19
EMAGE:17121
euxassay_001509_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17121Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17121_wholemount_strong.wlz
17121_wholemount_moderate.wlz
17121_wholemount_weak.wlz
17121_wholemount_possible.wlz
17121_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17121_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4505
Entity Detected:Fndc4, fibronectin type III domain containing 4 ( MGI:1917195)
Sequence:sense strand is shown

>T4505
CGGACGCGTGGGCGGACGCGTGGGATCATTGTAGTGGTATTGCTCATGTGGGCTGCTGTAATCGGGCTAT
TCTGCCGTCAGTATGACATCATCAAGGACAACGACTCCAACAACAACCCCAAGGAGAAGGGGAAGGGGCC
TGAACAGAGTCCTCAGGGAAGGCCAGTGGGGACAACAAGACAGAAAAAGTCTCCATCAATCAACACCATT
GATGTTTGATCGGATGAAGAACCAGAACCAGAAGAGAGGATGCACTGTGAGGATGCACTGTATGAGTAAG
GGGGCGGGGGCAGGAAAGCCTAAGATGGTGACCCGCTTGAGACTCCCACAAGGCAGTATGCTCCCAGAAT
CCCAGGCTGGTACCCATCCTCTTTCCACTGTAAGCAGGGCCAGAATGTAGGTCTGGTAGATTCTGTATCC
CTGGACTTGGGAGTGGATATCAAATGGAATATCTCCCATCCCCCAGGTCCAGGGGAGAATCACTTATTCA
ACCCTATCCCACTAGGTCCTCGCTAGGGGCCCCATGTCACCTGCATCAGGACTATTGGCACTCACTAGCT
GCCCCTACAGCTTGCCTCTGGGCCTCAGAGAGGGGTGTTTCTGCCCGGGTTGCCCTCCTTCAGTGAGTCA
GAAGAACCTTCTGGGCCTAGAGGCAGACGCTGCATTGCACTATTCCAGTGTCTTCCACGGAGCCTCTGGG
GCTCCTCCCTCACCTGGCAGCCCCTCCAGCTGCTGGTGATCTCACCCCTGGGACATTTTTCCAATAAAGG
TTCTGGACAAACTGGAACTGACTGGTTCCTGTATGGTATGCTGAAGACATCTCTACACCTTGTCAGTTCT
TCTCAGGCCTCCACCAACCTGAAAGGACAGAGTCTTGATAAGATGTTTGCGTCAGTGTAACAATGTATTC
ATCTAAGATGGGCGGGGAAAGACAAAAGGGGAGGGGATGAAAGCCAAAGGCCTCCCTTCTTTGTCTTTGC
TGAATGAGAAGAGAGAAAATGAGAAGTCACAGTTTTCATACCAACAGAAACCAGGCCATGTCATATAAAA
GGGCCAGTAGATTTTTTTTTTATCTTTGTTCAGGACCTTGTGCATACTAAGCAAATATTCTACTGTTGCG
CTATATAACCAATCCCTTCCCTGCACTTTTGACTCCAGCACTCACTTTGGGGAAATGGTCAGAAGGGCTG
AGCTGTCTTAGGAGCTGACAGGAGAGCAGCCACCACTAATGTGCCCTTGGTGCCATGTGTTCTCACCCCG
GGCACACCAGTGCCTCGTCTTTGTTTTCTTTTTCATCTATGTCTTTGTTCATTCAAAGTTAATAATAATT
GTAATCCATAAATGAGTTTATATTTATACTCTAACATATCCAGAGGATTCTAGAAATAAAGCTGAGGGGT
TTGGATGCCCCTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4953822 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4953822 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17122 same embryo
 EMAGE:17126 same embryo
 EMAGE:17125 same embryo
 EMAGE:17124 same embryo
 EMAGE:17123 same embryo
 EurExpress:euxassay_001509 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS