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EMAGE:17261

Tmed1 transmembrane emp24 domain containing 1 ( MGI:106201)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17261 EMAGE:17261 EMAGE:17261 EMAGE:17261 EMAGE:17261
"Pseudo-wholemount" of euxassay_001652. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001652_01 euxassay_001652_02 euxassay_001652_03 euxassay_001652_04
EMAGE:17261 EMAGE:17261 EMAGE:17261 EMAGE:17261 EMAGE:17261
euxassay_001652_05 euxassay_001652_06 euxassay_001652_07 euxassay_001652_08 euxassay_001652_09
EMAGE:17261 EMAGE:17261 EMAGE:17261 EMAGE:17261 EMAGE:17261
euxassay_001652_10 euxassay_001652_11 euxassay_001652_12 euxassay_001652_13 euxassay_001652_14
EMAGE:17261 EMAGE:17261 EMAGE:17261 EMAGE:17261 EMAGE:17261
euxassay_001652_15 euxassay_001652_16 euxassay_001652_17 euxassay_001652_18 euxassay_001652_19
EMAGE:17261 EMAGE:17261 EMAGE:17261
euxassay_001652_20 euxassay_001652_21 euxassay_001652_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17261Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17261_wholemount_strong.wlz
17261_wholemount_moderate.wlz
17261_wholemount_weak.wlz
17261_wholemount_possible.wlz
17261_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17261_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5675
Entity Detected:Tmed1, transmembrane emp24 domain containing 1 ( MGI:106201)
Sequence:sense strand is shown

>T5675
GGGTGACCCGGATGATGGCGGCCGGCGCGGCCGTAGCACTGGCCCTGTGGCTACTCCTGCCAGCAGTAGG
AGTGGGAGAGGCAGGGCCGCCGCCTATCCAGGACGGCGAGTTCACATTTCTGCTTCCCGCCGGGAGAAAG
CAGTGTTTCTATCAGTCCGCACCGGCCAATGCTAGTCTTGAGACCGAGTACCAGGTGATCGGAGGTGCTG
GGCTGGACGTGGACTTCACCTTGGAGAGCCCTCAGGGTGTGCTGTTGGTCAGTGAGTCTCGAAAGGCTGA
TGGGGTACACACGTGAGTGAAGTCCTGCCCTGCCTTGGTTCAGTTACAGCCCTGCAGCTCCCCAGTGGCC
TCAGGTTACCATCCTACTGGTTCCACAGACCAGCTGGCTGGTCACTCCAGGGTCACGTCTATGTCTCATC
TGTCTGCCCAGGGTGGAGCCTACTGAGGCCGGAGACTACAGGCTGTGCTTTGACAACTCCTTCAGCACCA
TCTCAGAAAAGCTTGTGTTCTTTGAGCTCATCTTTGACAGCTTCCAAGATGAGGAGGAGGTAGAAGGTTG
GGCGGAGGCTGTGGAGCCAGAAGAGATGCTTGATGTCAAAATGGAAGACATCAAGGAATCCATAGAGACC
ATGAGGACCCGGCTGGAACGGAGCATCCAGATGCTCACTCTGCTCCGAGCCTTTGAGGCTCGTGATCGAA
ATCTTCAAGAAGACAACCTGGAGCGGGTCAACTTCTGGTCAGCTGCCAATGTGGCTGTGTTGCTGCTGGT
GGCTGTCCTGCAAGTCTGCACACTCAAGCGCTTCTTCCATGACAAGCGCCCTGTACCCACGTAGCCCCTG
CCACAGAGGATGAGGGCAGCGGGTGTGTGACTTGCTGGACACCTCCCAGACTCAGATGAGACACTACATA
GTTGGGTCCTTAGCAGTGGCCCCATGTGTCTCCCTTCCTCAGTGACCAGGGAGTGCCAATGGCTCACAGA
CCCCTCGGAAGGGGGAGGGCTCAGCGACTGTGCCTGTTCCTTGGAGGGTGGAAGTGCTGGGCGCAGCAGT
GTGGGGACACTGCTCTTGGATGCCCTGGCTTTCTCCTGAAATCGTGCCTTAGCTTCAGTCTTGCAGCTAT
CAGGATGGGGTGAAGCTGTGGTGCTGCCCCCCACCCTCCAACTAGACACCCCAACTGCAATGTCTCTGCT
CTCCTCCTGGGGTAAGCCTACTTCACTAGGGTCTGGGAAGGAGACACATCTGCAGAGTTCTTGCCAGGAC
AGTCACTTTTATTTGAAAGGAAGGAGCCCTGGCCCCTTGGCCCAGAGGGGAGCCAGCTAGTAGGTGGTTT
GGGAGAGGCCCCTTCCTTCTCTCTGGGTGCAGGGCCTCAGAGAAGGCTGGCCCATGAGCCTCAAGGAACA
GAGGGCATTTGTCCTGGGCACTGGAGTCAATAAATTATGGTCAGAAAGTTAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2609517 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2609517 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17260 same assay
 EMAGE:17258 same embryo
 EMAGE:17262 same embryo
 EMAGE:17259 same embryo
 EMAGE:17264 same embryo
 EurExpress:euxassay_001652 same experiment
 EMAGE:17263 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS