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EMAGE:19541

Serpinb9c serine (or cysteine) peptidase inhibitor, clade B, member 9c ( MGI:894669)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19541
euxassay_004967_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19541Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19541_wholemount_strong.wlz
19541_wholemount_moderate.wlz
19541_wholemount_weak.wlz
19541_wholemount_possible.wlz
19541_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19541_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8017
Entity Detected:Serpinb9c, serine (or cysteine) peptidase inhibitor, clade B, member 9c ( MGI:894669)
Sequence:sense strand is shown

>T8017
GGCTAACGCAGGAAGGTTCTTCACGGGCAGAGTCCAGAATGACCACCCTTCCTGAATATTGTGTATGAAG
CAAATGGCACCTTTGCCGTCAATCTTTTAAGGATGTTATGTAATAACAACCCTTCCAAAAATGTATGCTA
TTCTCCCATCAACATCTCCTCTGCTCTAGCTATGTTCCTTTTGGGAGTGAAAGGAAACACCGAAATCCAG
ATATCTGAGGCAATTGGCTTAAACACAGCAATAGACATTCATCAGAGCTTCCTGTGGATTCTCAATATCC
TGAAGAAGCCAACCAGAAAGTACACCTTCAGAATGGCCAATAGGCTCTTTGCAGAGAACACTTGTGAATT
CCTCCCAACATTTAAGGAGCCCTGTCTTCAGTTCTATCACTGGGAGATGGAGCACCTCCCCTTCACCAAG
GCTCCAGAGGAGGCCAGGAATCACATAAACACATGGGTCTGCAAAAATACAAAAGGGAAAATTCCAGAAT
TGTTGTCAAGTGGCTCGGTTGATTCAGAGACCAGGCTTGTACTTGTCAATGCCTTATATTTCAAAGGAAG
ATGGCATCACCAGTTTGACATAAAGTCCACCAGGAAAATGCCCTTTAAAATAAACAAGGATGAGGAAAGA
CCAGTGCAGATGATGTTTCAGGAAGACATGTTTAAGCTCGCCTATGTGAATGAGGTGCAGGTTCAAGTGC
TGGTGCTGCCCTATAAGGGCAAGGAGCTGAGCTTGGTGGTCCTGCTCCCGGATGATGGTGTGGAACTCAG
CAAGGTGGAAGGCAATCTCACTTTTGAGAAGTTATCAGCTTGGACCAAACCAGACTATTTGAAGACCACT
AAAGTTTTGGTTTTCCTTCCAAAATTTAAACTGGAAGATTATTATGACATGGAGTCCATCTTTCAGGACT
TGGGAGTGGGGGATATTTTCCAAGGGGGCAAGGCTGACTTATCAGAAATGTCTCCAGAGAGAGGCCTGTG
TGTGTCCAAGTTCATTCAAAAGTGTGTTGTGGAAGTTAATGAAGAAGGCACAGAAGCTACAGCAGCCACA
GCTGATGATACTGTATGTTCAGCTGAAACTCATGATGGCCAGACTTTCTGTGCTGACCACCCTTTCCTTT
TCTTTATCAGGCACAACAAAACCAACAGCATCCTGTTCTGTGGCAGGTTCTCATTTCCATAAAGACACTT
TTACTATGTGAAGGAGAGATCTCTCTTCAGCATCTTAATACTCCTATAGCTCTGTGAGAATGGACAAGTA
GGGGCAAAGCACCTTCCACAATAAGGGCACTTTCTTGTTTGGAGCCTGGTCTATTGACACCCACATTTAT
CTGTCCCTACCCTGACACTCATCTGTGCCCTTTGGCAAGCCAGAGTTGCTTGGTTTCCTGTTGTGTTTAG
AATCCAAAGATATTCTACGAGATAGCCTACAAGGTTCTCTAAGGTAATCCTGAATAAATGTCAGACTCAC
TGCACAAACTATGCCAACTATATACACTGCTTTCCTGGCATATGAATCTTGCCATATCTTGCCTTACCTT
GATTACATCCTAGTAAATGCTTCCGTGAACAATGAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30018215 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30018215 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19539 same embryo
 EMAGE:19542 same embryo
 EMAGE:19538 same embryo
 EMAGE:19543 same embryo
 EMAGE:19540 same embryo
 EurExpress:euxassay_004967 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS