Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:19543

Rabl3 RAB, member of RAS oncogene family-like 3 ( MGI:1914907)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19543
euxassay_004966_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19543Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19543_wholemount_strong.wlz
19543_wholemount_moderate.wlz
19543_wholemount_weak.wlz
19543_wholemount_possible.wlz
19543_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19543_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8016
Entity Detected:Rabl3, RAB, member of RAS oncogene family-like 3 ( MGI:1914907)
Sequence:sense strand is shown

>T8016
AGATGGCGTCCCTGGATCGGGTGAAGGTTCTGGTGTTGGGAGACTCAGGTGTTGGGAAATCTTCACTCGT
CCATCTTCTGTGCCACAATCAAGTGTTAGGAAATCCGTCATGGACTGTGGGCTGCTCGGTGGATATCAGA
GTTCATGACTACAAAGAAGGGACCCCTGAAGAGAAGACATACTATATAGAACTATGGGATGTTGGAGGCT
CTGTGGGCAGTGCCAGCAGTGTGAAAAGCACAAGAGCGGTGTTCTACAACTCTGTAAACGGCATCATTTT
AGTACATGACTTAACAAATAAGAAGTCATCTCAAAACTTATATCGCTGGTCATTGGAAGTTCTCAATCGG
GATGCAGTTCCAACCGGAGTCCTGGTGACAAATGGGGATTATGACCGAGAACAGTTTGCTGATAACCAAA
TCCCACTGTTGGTAATAGGGACTAAACTGGACCAGATTCATGAAACCAAGCGCCATGAAGTTTTAATCAG
GACTGCTTTCCTGGCTGAGGACTTCAATGCTGAAGAGATTAATTTGGATTGCACAAACCCACGGTCCTCA
GCTGCAGGCTCCTCCAATGCTGTCAAGCTCAGTAGATTTTTTGATAAGGTTATAGAGAAGAGATATTTTT
TTAGAGAAGGTAATCAGATTCCGGGCTTTTCTGATCGGAAGAGGTTTGGAGGAGGGGCACTGAAGAACTT
CCACTGTGACTGAGTGGCCCTCAGCCCTGGAAGAGCAAGGGAACAGCAGCAGTGTCCACAGCTTCCTCTT
GCTGTGTAGGGACATTAACTTCTCAGGCTTTGGGAAAAACATCTCAAAATGCTACCTCACCCTCTCTTGG
AAAATTGAAAGGAAGCAGCGGCATGGAAGGTCCTAGCTCTGCCCATTCTCTGTATCCTCACCACCCTGTC
CCTGATTATAGCTTATGTAAAAGCCTTGTGACGACATAAAGGCTTGTCAAACCCATGCAGTAAAGAACTG
GAGACAAGGGCTGCAGCGAAGGCTGACTCTTACTTGGAACCAGCGGGTTTTACAGGCCTGCGATTTTCCC
ACACTTGCTGCTGAAGGCTTAATTAAGTACTTCAGAAACATATCTGTGTTGTTTTACTTCCTGAGGGGAA
AGGTCATGTTAATCAGCCCTGAGTTATCCACCCCAAACCATCCCTGCCATTTTAAAAGAAGCCAAATGGT
GTTATTTCATTTTCTCCATCCTCATTACACACAGGGATGCCTAAGAATAGCAACCCCATCTCCTCTGCTC
TCTCTGGGAAAGGGCTTAGTGTCTGGGAAGAGCGATGGACTAATAGCTGGAGTTAAATAGAAATACAAAT
TAATAATACATGGCGAACAGACCAGAAGAGAAGGGTCTGTGAGACTCTAACAGCTCCTCTGCTCCAAGGT
TGCAGCTGTCGGAAGGCTCTTTCTGCTTTCTGTTTGGAAAGTGGGTGAAATCTGAGACCTGTACAAGGCC
AGTAAGACAGATTATTGCCTCTTTGGTGGTTCTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTT
TTTTTTAATTTTCTTTTCCCAGTTTGGTTGGTTGTTGTTCTGTTTATTTGTAAGGAAATCCAATTCCTGG
AATGTCCCTTAATACGATGAACAGTAAGCTAAGACTATTATCCTTGTCTTAACAATGTATTTATGAGAAG
TCAATTACGTCCCAGAGTAACGAACTCATATACATTATGAGCCCGTGTTTGAGGTTTCATCATCACGCTG
CAACGTTTTTGGCGGTGGTGTGTATGTATATGTTTGCATAACTGGTTGTCATTGTTTCTTAGCCCATCTT
TTTTGCTGGTTTAATCTCAGTTCCTTAGTTTATAAAATTGGTTGCCAAAAAACGACTGTAATTGGCTGCT
GTGTTCAACACCTTGTTTCCAGATGCTCCTGTCTGCAGCGGCGCCCCGCTTCCTGCTCCCCGCTCCCCGC
TCCCTGGCTTTGTACCTAATTAAAAAATCATGGTATGAATATATAAAAAAAAAAAAAAACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30022531 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30022531 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19539 same embryo
 EMAGE:19542 same embryo
 EMAGE:19538 same embryo
 EMAGE:19541 same embryo
 EMAGE:19540 same embryo
 EurExpress:euxassay_004966 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS