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EMAGE:31610

Nedd9 ( MGI:97302)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31610 EMAGE:31610 EMAGE:31610 EMAGE:31610 EMAGE:31610
euxassay_006351_01 euxassay_006351_02 euxassay_006351_03 euxassay_006351_04 euxassay_006351_05
EMAGE:31610 EMAGE:31610 EMAGE:31610 EMAGE:31610 EMAGE:31610
euxassay_006351_06 euxassay_006351_07 euxassay_006351_08 euxassay_006351_09 euxassay_006351_10
EMAGE:31610 EMAGE:31610 EMAGE:31610 EMAGE:31610 EMAGE:31610
euxassay_006351_11 euxassay_006351_12 euxassay_006351_13 euxassay_006351_14 euxassay_006351_15
EMAGE:31610 EMAGE:31610 EMAGE:31610 EMAGE:31610 EMAGE:31610
euxassay_006351_16 euxassay_006351_17 euxassay_006351_18 euxassay_006351_19 euxassay_006351_20
EMAGE:31610 EMAGE:31610
euxassay_006351_21 euxassay_006351_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
hindlimb digit 5 mesenchyme
strong strong
regionalstrong expression: see section 04 05 06
sternum
strong strong
regionalstrong expression: see section 10 11 12 13 14
hindlimb digit 4 mesenchyme
strong strong
regionalstrong expression: see section 04 05 06
forelimb digit 2 mesenchyme
strong strong
regionalstrong expression: see section 03 04 05
rectum
moderate moderate
regionalmoderate expression: see section 11
ureter
moderate moderate
regionalmoderate expression: see section 14
left lung
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11
lower leg mesenchyme
strong strong
regionalstrong expression: see section 01 02 03
rest of cerebellum ventricular layer
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16
forelimb digit 1 mesenchyme
strong strong
regionalstrong expression: see section 03 04 05
upper arm mesenchyme
strong strong
regionalstrong expression: see section 01 02
lower jaw molar
strong strong
regionalstrong expression: see section 07 08
upper jaw molar
strong strong
regionalstrong expression: see section 07 08
trachea
strong strong
regionalstrong expression: see section 11
hindlimb digit 3 mesenchyme
strong strong
regionalstrong expression: see section 04 05 06
upper leg mesenchyme
strong strong
regionalstrong expression: see section 01 02 03 04 05 06
thymus primordium
strong strong
regionalstrong expression: see section 09 10 12 13
kidney pelvis
moderate moderate
regionalmoderate expression: see section 06
vibrissa
strong strong
regionalstrong expression: see section 04 06 07 08 09 10 11
telencephalon ventricular layer
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16
midbrain ventricular layer
strong strong
regionalstrong expression: see section 04 05 06 07 08 09 10 11 12 13 14
nasal cavity olfactory epithelium
strong strong
regionalstrong expression: see section 10 11 12 13 14 16
right lung
strong strong
regionalstrong expression: see section 11 12 13 14 15 16
hindlimb digit 1 mesenchyme
strong strong
regionalstrong expression: see section 04 05 06
medulla oblongata basal plate ventricular layer
strong strong
regionalstrong expression: see section 06 07 08 09 10
stomach
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08
kidney calyx
moderate moderate
regionalmoderate expression: see section 06 07 14
pons ventricular layer
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16
foot mesenchyme
strong strong
regionalstrong expression: see section 03 04
hindlimb digit 2 mesenchyme
strong strong
regionalstrong expression: see section 04 05 06
retina
strong strong
regionalstrong expression: see section 01 02 03 04 05
anterior naris epithelium
strong strong
regionalstrong expression: see section 13 14 15
midgut
moderate moderate
regionalmoderate expression: see section 08 09 10 11 12 13 14 15 16
thyroid gland
strong strong
regionalstrong expression: see section 09 13
spinal cord ventricular layer
strong strong
regionalstrong expression: see section 07 08 09 10 11
external naris epithelium
strong strong
regionalstrong expression: see section 14
forelimb digit 3 mesenchyme
strong strong
regionalstrong expression: see section 03 04 05
vomeronasal organ
strong strong
regionalstrong expression: see section 13 16
medulla oblongata alar plate ventricular layer
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12 13 14
renal cortex
moderate moderate
regionalmoderate expression: see section 04 05 06 07 13 14 15 16
aorta
strong strong
regionalstrong expression: see section 09 11 12 13
tail mesenchyme
strong strong
regionalstrong expression: see section 09 10 11 12 13 14 15
forearm mesenchyme
strong strong
regionalstrong expression: see section 01 02
lower jaw incisor
strong strong
regionalstrong expression: see section 12 13 16
upper jaw incisor
strong strong
regionalstrong expression: see section 13 14
diencephalon lateral wall ventricular layer
strong strong
regionalstrong expression: see section 10 11 12 13 14
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8049
Entity Detected:Nedd9, ( MGI:97302)
Sequence:sense strand is shown

>T8049
AAGAGGTAATCCGGGATCTGCAGAGAGAGAAGCATAAGGACACAGAGGGACGAGTTCCCATCCCTGCCTG
CCTACCTAGAAGAGATCAGGGTGTCCAGGGTCACAAGATGGTCTGTCCACTGCGGTTCTGCGTTCAGGCT
AGTGAAGTGTGAGTCTCCAGCACCAGACGCTGGCGGAGAAGCACGGCAGAGTTGTTCATGGGGAGATATG
ACAAGGAGGAAACAGGCCAGCAGACTGCAGCCCTGGGACTGTCCTGGAGATCCAGAGTGCCAACGCTCCT
CAAGAGAAAATGTGGGCGAGGAATCTTATGGCAAGGGCCTTGTATGACAACGTCCCTGAGTGTGCTGAGG
AGCTGGCCTTCCGCAAGGGAGACATCCTAACTGTCATAGAGCAGAACACAGGAGGGCTTGAGGGATGGTG
GCTGTGTTCCCTCCACGGTCGCCAAGGCATTGTCCCAGGGAACCGGGTGAAGCTTCTGATTGGTCCAGTG
CAAGAGACCCCCGGTCATGAGCAGCCTACTCCTGGACCTATGCATCAGACCTTTGGCCAACAGAAACTCT
ATCAAGTGCCAAATTCCCAGGCAGCATCTCGGGATACCATCTACCAAGTGCCACCCTCCTACCAGAATCA
GGGAATTTACCAAGTACCCACTGGCCATGGCACTCCAGAACAAGATGTATATCAAGTACCACCATCAGTT
CAGAGGAACATTGGCGGCACTAATGGACCCCTTCTAAGCAAAAAGGTGATCACCCCAGTGAGGACGGGCC
ATGGCTATGTGTACGAGTACCCATCCAGATACCAAAAGGATGTCTACGATGTCCCTCCTTCCCACAGCAC
TCAAGGGGTATATGACATCCCTCCTTCCTCAGTAAAAGGCCCTGTGTTTTCAGTTCCAGTGGGAGAGATA
AAACCTCAAGGGGTATATGACATTCCCCCCACCCAAGGGGTCTATGCCATTCCACCATCGGCTTGCCGAG
ATGAGGCAGGGCTCAGGGAAAAGGAATATGATTTCCCTCCTCCAATGAAGCAAGATGGAAAACCAGACAC
CAGACCTGAGGGGGTTTATGACATCCCTCCAACCAGCACCAAGACAGCAGGCAAGGACCTTCACATCAAA
TTCCCCTGTGATGCTCCAGGAGGTGTCGAACCAATGGCACGAAGACACCAGAGCTTTTCCCTGCACCATG
CACCCTCTCAGCTGGGACAGTCTGGGGACACTCAGAGTGATGCCTATGATGTCCCCCGGGGAGTTCAGTT
TCTGGAGGTACCAACAGAAACCAGTGAAAAGGCAAATCCGGAGGAAAGAGACGGTGTCTACGATGTCCCT
CTGCACAACCCAGCAGATGCCAAAGGCTCTCGGGACGTGGTAGATGGGATCAACAGACTGTCTTTCTCCA
GCACTGGCAGTACCAGGAGTAACATGTCCACCTCTTCCACCTCCTCAAAGGAGTCTTCACTGTCAGCCTC
CCCGTCTCAAGACAAAAGGCTCCGACTGGACCCAGACACAGCCATAGAGAAGCTCTATCGGCTCCAGCAG
ACCCTGGAGATGGGTGTGTGCAGCCTCATGTCACTGGTCACCACAGACTGGAGGTGCTACGGATACATGG
AAAGGCACATCAATGAGATCCGCACCGCGGTGGACAAAGTAGAGCTGTTCTTACGAGAATACCTCCATTT
TGCCAAGGGAGCTTTAGCCAATGCCTCCTGCCTCCCAGAACTGGTCCTCCACAACAAAATGAAGCGGGAA
CTCCAAAGAGTAGAAGATTCCCACCAGATTCTAAGCCAAACCAGCCATGACTTGAATGAATGCAGCTGGT
CCCTGAATATTTTAGCTATCAATAAGCCCCAAAATAAGTGTGATGACCTAGACCGGTTTGTGATGGTCGC
CAAGACAGTGCCAGACGACGCCAAACAACTGACCACCACCATCAGCACCTACGCGGAGACCCTCTTTAGA
GCAGATCCTGCCAATTCCCATCTGAAGAATGGGCCCAACAGCATCATGAACTCAAGCGAGTACACACATC
CGGGCTCCCAGATGCAGCCACTGCATCCTGGTGACTACAAAGCCCAGGTCCACAGTAAGCCGTTGCCTCC
TAGTCTAAGCAAGGACCAGCCACCAGACTGCGGTAGCAGTGACGGTTCTGAGCGGAGTTGGATGGATGAT
TATGATTATGTTCACCTACAGGGCAAGGAGGAGTTTGAGCGACAGCAGAAGGAGCTCTTGGAAAAGGAGA
ACATCATGAAGCAGAGTAAGGCGCAGCTGGAGCATCACCAGCTGAGTCAGTTCCAGCTGTTGGAACAAGA
GATCACCAAGCCTGTGGAGAATGACATCTCTAAATGGAAGCCCTCTCAGAGCCTCCCAACCACCAACAAC
AGTGTGGGTGCTCAGGATAGGCAGTTGCTTTGCTTCTACTATGACCAGTGCGAGACCCATTTCATTTCCC
TACTCAACGCCATCGACGCCCTCTTCAGCTGCGTCAGCTCAGCCCAACCCCCACGGATCTTTGTGGCGCA
CAGCAAGTTTGTCATTCTTAGTGCGCACAAACTGGTGTTCATTGGAGACACTCTGACAAGGCAGGTGGCT
GCCCAGGACATTCGCAACAAAGTCAGGAACTCCAGCAACCAGCTCTGCGAACAGCTCAAGACGATAGTGA
TGGCGACCAAAATGGCCGCCCTCCACTACCCCAGTACCACCGCCTTGCAGGAAATGGTGCACCAGGTGAC
AGACCTGTCCAGAAATGCTCAGCTGTTTAAGCGTTCCTTGCTGGAGATGGCCACCTTTTGAGAAGACAAA
GAAGTGGAAGGAACTGGGTGAATAATTACTAAGGAAAACTGGAAATACTATCTAGTTTTTGTAAATGCTA
TCTATTTTTGTAGATATTTTATATGAAATTGAAATATTTCGATGTTTTTGTGAGTTAGTCGATTTTCATC
AATTCAGGGAGCTGAAGCTTGGATTTATTTTGTTTCCCCTGTGTGGTTCTGATATAAACATATAAGTATC
TAAGACATAAGTTGTACAGAACTGTGTCCACGTTTGTGTATGCCTACATATCCATATTTGTTTATCTGTG
TGTCTGATACAGCCCATTAAAAACATGAATTGAGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAG
Notes:The probe template was PCR amplified from IMAGE:30077589 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30077589 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_006351 same experiment
 EMAGE:30406 same embryo
 EMAGE:30617 same embryo
 EMAGE:31531 same embryo
 EMAGE:31530 same embryo
 EMAGE:31558 same embryo
 EMAGE:30622 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS