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EMAGE:7114

2810004N23Rik RIKEN cDNA 2810004N23 gene ( MGI:1913773)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114
"Pseudo-wholemount" of euxassay_002580. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002580_01 euxassay_002580_02 euxassay_002580_03 euxassay_002580_04
EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114
euxassay_002580_05 euxassay_002580_06 euxassay_002580_07 euxassay_002580_08 euxassay_002580_09
EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114
euxassay_002580_10 euxassay_002580_11 euxassay_002580_12 euxassay_002580_13 euxassay_002580_14
EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114
euxassay_002580_15 euxassay_002580_16 euxassay_002580_17 euxassay_002580_18 euxassay_002580_19
EMAGE:7114 EMAGE:7114 EMAGE:7114 EMAGE:7114
euxassay_002580_20 euxassay_002580_21 euxassay_002580_22 euxassay_002580_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7114Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7114_wholemount_strong.wlz
7114_wholemount_moderate.wlz
7114_wholemount_weak.wlz
7114_wholemount_possible.wlz
7114_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7114_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5208
Entity Detected:2810004N23Rik, RIKEN cDNA 2810004N23 gene ( MGI:1913773)
Sequence:sense strand is shown

>T5208
CCACGCGTCCGCCCACGCGTCCGCGGGACCCCGGGCACCGCCATCTTAACCAGGCCCGAGGCCGCGCAGG
GACCGTGACGCACGCGCAGAAGCCGCGCCGGAAGCGGAAGTGGTGGGCACTGGGCGGGATCTGGGGGGGT
CTCCGTGCTGATTCCCATGGCGGCGGAGCACGATTCGGACTCCGTTGAGCCTCCTGGTTCGGAGGCACTC
CTGGACGCCGTTCTGCGGACCCTCTACGACCTGGGAGAGACGGAAGGTGAAACAGAGCAGAAAAGGATCC
GAAAGAAGAAAGCAAAGAAGAGAGACTCAGAGACTATAGAAGATGTGGCAGTAGAGCCGCTTCCCCTGCC
TGGATCTCCTGTACGAGGCCAGAAGAAGAGTGCTTCCAGCTTTTTCCAGAAGCTCAGAGAAGAACTGCAG
TCTGCTCCCGCTGCCCCTTCAGAAGTCCCTGTCACTACTGCAGTCTCCCTCTCTCCCCCAAAGAACGGCA
GCAAGCTAGTGGAAGTGGTAGAGTTTCAAAGCAAAAGTAAAAAGAGAAAACTAAAGTCAGATGAAGATGA
GCCGGCAAAGAATAAAACAAAGGTCGTTAAAAAAGATGTGGATATTCAGGAGTTTAACCTAGAAAAGGCT
CGTCTGGAAGTACACCGCTTTGGGATCACGGGCTATGGCAAAGGAAAAGAAAGAGTCCTGGAGCGGGAGC
GAGCTATCATGCTGGGGGCTAAGCCTCCCAAGAACACTTACGTGAACTACAAGGTTTTGCAGAAACAAAT
CAAAGAGAAGAAGATCGCAGTGGAAGAAGAAAAGAGAGCGGCCCGGGAGACAGACATTTTCAAGAAAAAG
AAGAAGAAAGGGAGAGGGCAGGAGGACAGGAGATCCAAAAAGTCGGCTCCCAGCATCTTGTCAAGTGGAC
AAGTTGGACAAGTTGGAAAATTCAGAAATGGAACATTGATTCTAAGCCCCACTGATATCAAGAAAATCAA
CTCTTCCAGGGTAGCTAAATGAAGTCCCTGTCAGCTCCAGAGAGGAGCAGGAACAGTGGCAGTGCGTGGG
ACATAGGACCCGGGAACCCTGTACCTGCCCTTTCTTGTTCCACAGGGTCTTTGTCATTTGAGCAGTGAGT
TTGCAGGCTGGCGGTGGCCCTGCTGAGCGCTGGGCCCCCCTCCCCCATGCTGCAGAGGGGAATGCACACA
CATGGCTACCTGTGCATACAGCAGGCAGTGGCCCTGCTGAGTGCTGGGCTGTGCGGGCTCCCCTCCTGTT
GGAGGTTGCTGGTGTCAGCACGTTGGTCACAGTCCACTTTTTCGTAATGTTACTGTCTCTAAGTGTCTGT
GAATGACGCTGAAGTGCCTTTTGGACTCAGTGAAGACACTGAGCGCACTTGTTATCCATTGGTTCTGTGG
GAAAGCGGTTCCGTTGTCAGCCTGCCACGAGTGTAAATCCACTTTGTAAGGATTTCTAAAAATACACCTC
TATAGTATGAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5354472 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5354472 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7109 same embryo
 EMAGE:7111 same embryo
 EMAGE:7110 same embryo
 EMAGE:7113 same embryo
 EMAGE:7112 same embryo
 EurExpress:euxassay_002580 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS