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EMAGE:7235

Sectm1a secreted and transmembrane 1A ( MGI:2384805)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7235 EMAGE:7235 EMAGE:7235 EMAGE:7235 EMAGE:7235
"Pseudo-wholemount" of euxassay_005210. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005210_01 euxassay_005210_02 euxassay_005210_03 euxassay_005210_04
EMAGE:7235 EMAGE:7235 EMAGE:7235 EMAGE:7235 EMAGE:7235
euxassay_005210_05 euxassay_005210_06 euxassay_005210_07 euxassay_005210_08 euxassay_005210_09
EMAGE:7235 EMAGE:7235 EMAGE:7235 EMAGE:7235 EMAGE:7235
euxassay_005210_10 euxassay_005210_11 euxassay_005210_13 euxassay_005210_14 euxassay_005210_15
EMAGE:7235 EMAGE:7235 EMAGE:7235 EMAGE:7235 EMAGE:7235
euxassay_005210_16 euxassay_005210_17 euxassay_005210_18 euxassay_005210_19 euxassay_005210_20
EMAGE:7235 EMAGE:7235 EMAGE:7235
euxassay_005210_21 euxassay_005210_22 euxassay_005210_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7235Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7235_wholemount_strong.wlz
7235_wholemount_moderate.wlz
7235_wholemount_weak.wlz
7235_wholemount_possible.wlz
7235_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7235_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6438
Entity Detected:Sectm1a, secreted and transmembrane 1A ( MGI:2384805)
Sequence:sense strand is shown

>T6438
GAGAGCTTGCTGGAGAAGGGACAGGGAGTGTTTCCAGACAGCTAGAGGAGACAACGGTCTCCTAAAGCCT
CCTGTCCCACCAGCCGGCCATGATGACCTGCCCTTCAGTGCCCGCTATCCCTACCCTCTGGCTGTTCAGC
ATCCTGCTCCTGGTGGTCTCCCTGAATGCTCAGAATAAAAGCTGGGACAACCCTATCTGCACGGAGGGCA
TCCTGTCTGTGCCTCGAGGCAATCCTGCAGTGATGACCTGTAACATCTCTAACACCTTCACCGATGTCAC
CATCCAGCTGTCTGCCAATGGAAAGGACAAGACCATCTTCGATAAAAAGCCCCAAGGAAACTTCTCTTGG
CGTGGGTGGGAGCTCCAAGTTCAAGGGGGGCAGGCACAGCTTGTGATCAAAGACACCCAGGACGACCACA
CAGGGATATACTTGTGGCAGCTGCATGGACGCCAGAGATGCTACAAAAACATCACCCTGAATATCTTAGA
GCCTTCCAACGAGGACAAGGTCCCAGACACTACGCTCTTTACATCCTTCCCAGATCACGCGAAGAGCTCT
CCAATAGAGGGCAAGCCTGGGACCCTTGTGGGAGTCATCACTGTCATCTTCATCTTGGGAGTCGCCGGAT
TCATTACGTTTATCTACTACAGGCACCGTCGTTCCTAGAAGCCCCAGATGGAATGTACCTCAGTGCCTGA
CTTGAGGTAAGGTGGTTCCAGGTCTGTGGCCAGTGGAAGCTGAAGGGAGCTGCCTGCAGGGTTGAGTCCA
GAGTGAGACCACCAGCATGGGCTTATGTTCTAAGCCCTAGGAGACCTCTGGGACTGCAGACACCATGGAA
GTCATCATTACGCGCTTGGCAGAGCACATGGCTTTGTTCAGTCTGCTGGGCACAAAGTCCTTTCCCTGAG
GGCAATGGAACCCTTGGCTCTGTACAGATCAGGGGACAGTGATTCACTGAAGAAGGACCTTGGAAGCTGG
AAAACAATTTAGGCATCTTTTGGTCACATGAACAAGAGTACAGCCTCCTGACTATGGTCTTCAGACATCT
GATCCATTCCTCAACTCTTCCCCAAATTGGGAATTCCCAGCCGCACAGCTCTTGACGATCGGCATAGGCT
TCATTATTTCTGCTAAACCTCTGAGGTTAGGGTCTCACTACCACCCAAAGAGCTCCAGTGTAAGCCTGAT
GCTGCACCAAGATTTGCTTCAGGTACAACTTGGGGGCGTACCTGATTTCTGACTCACAACAGAAACGAGT
TCGGGAAGCCCAGATGTCAGGTTCCAGGGGCCAAAATAGGGAGCTAAGACTTTCAGATGAATCATCTCCC
CACTCCCACCCCTGCAAGGCAGAGTGCTGTCAGGAACAGGGGTCTGTGGAAGGATGTAGTGTTGGTTGGC
AGGCATTGCTCTCCTGAGGATCATAGAGCATCTTGAGATTCCCTGGGGGCTTCTCTTCAGCAGACTCCTG
AGCCCCAACTCCCTGATTCAACAGCCACTACCCACTGTTCTTTTCTAAACTTTTGTCCTAGTTACAATGT
TATTTTTTCTTACAATTAAAAAATGATTTTTGTAGAAACTTC
Notes:The probe template was PCR amplified from IMAGE:3585040 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3585040 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7233 same embryo
 EMAGE:7234 same embryo
 EMAGE:7232 same embryo
 EMAGE:7231 same embryo
 EMAGE:7236 same embryo
 EurExpress:euxassay_005210 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS