EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:7362

Dars aspartyl-tRNA synthetase ( MGI:2442544)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004458. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004458_01	euxassay_004458_02	euxassay_004458_03	euxassay_004458_04

euxassay_004458_05	euxassay_004458_06	euxassay_004458_07	euxassay_004458_08	euxassay_004458_09

euxassay_004458_10	euxassay_004458_11	euxassay_004458_12	euxassay_004458_13	euxassay_004458_14

euxassay_004458_15	euxassay_004458_16	euxassay_004458_17	euxassay_004458_18	euxassay_004458_19

euxassay_004458_20	euxassay_004458_21	euxassay_004458_22	euxassay_004458_23	euxassay_004458_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7362_wholemount_strong.wlz

7362_wholemount_moderate.wlz

7362_wholemount_weak.wlz

7362_wholemount_possible.wlz

7362_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7362_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6460
Entity Detected:	Dars, aspartyl-tRNA synthetase ( MGI:2442544)
Sequence:	sense strand is shown >T6460 GGGAGGGCGAGACTGTGCGGGAGGGAGCCGCTTCTTAGCCTGTCCTACGGAAGCCTGCGAGGGAGGGTGG TATCCACTCCCCAAATCCAGTGTCCTGATGCCCAGCGCCAACGCCAGCCGTAAGGGTCAGGAGAAGCCGC GGGAGATCGTGGACGCGGCGGAAGATTATGCTAAAGAGAGATATGGGATATCTTCTATGATACAATCACA AGAAAAACCAGATAGAGTTTTGGTTCGAGTTAAGGACCTGACAGTTCAAAAAGCTGATGATGTTGTTTGG GTCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGGGAAGCAGTGCTTCTTAGTCCTGAGGCAGCAGCAGT TTAATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCAGCCAACAT CAACAAAGAAAGTATTATTGACGTAGAAGGTGTTGTGAGGAAAGTCAATCAGAAAATTGGAAGCTGTACC CAGCAGGATGTTGAGTTGCATGTCCAGAAGATTTATGTGATCAGCTTGGCTGAACCTCGCCTGCCCTTGC AGCTGGATGATGCCATTCGGCCTGAAGTGGAAGGAGAAGAGGACGGAAGAGCTACCGTTAACCAGGATAC AAGATTAGACAACAGAGTCATTGACCTTAGGACATCAACTAGTCAGGCCATCTTCCGTCTCCAGTCCGGC ATCTGCCATCTCTTCCGAGAAACTTTAATTAACAAAGGTTTTGTGGAAATCCAAACTCCTAAAATTATTT CAGCTGCCAGTGAAGGAGGAGCCAATGTTTTTACTGTGTCCTATTTTAAAAATAATGCCTACCTTGCTCA GTCTCCACAATTGTATAAGCAGATGTGCATTTGTGCTGATTTTGAGAAGGTTTTCTGCATTGGACCAGTT TTCAGAGCTGAAGACTCCAATACCCATAGACATCTGACTGAATTTGTTGGTTTGGATATTGAAATGGCCT TTAATTATCATTACCATGAAGTTGTAGAAGAGATTGCTGACACTTTGGTGCAAATATTCAAAGGACTTCA AGAAAGGTTTCAGACTGAAATTCAAACTGTGAGTAAACAGTTCCCATGTGAGCCGTTCAAATTTTTGGAG CCAACTTTAAGACTGGAATATTGCGAGGCTTTGGCAATGCTTAGAGAAGCTGGAGTTGAAATGGACGATG AGGAAGATCTAAGTACACCAAATGAAAAACTGTTGGGTCGTTTGGTGAAGGAAAAGTATGATACAGACTT TTATGTTCTTGATAAATATCCATTGGCTGTAAGACCTTTCTATACCATGCCTGACCCAAGAAATCCGAAA CAGTCCAACTCTTACGATATGTTCATGAGAGGAGAAGAAATATTGTCTGGAGCACAAAGAATCCATGATC CTCAGTTGCTTACAGAGAGAGCTTTACACCATGGAATTGATTTGGAGAAAATCAAAGCTTACATTGATTC CTTCCGCTTTGGAGCTCCTCCTCATGCTGGTGGTGGCATTGGGCTGGAAAGGGTGACGATGCTGTTTTTA GGATTGCATAACGTACGCCAGACCTCAATGTTCCCTCGTGACCCCAAACGACTCACGCCTTAAAGCCACA CTTTTTATTCTCTCCAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGAAT TAATGTCTTACTAAAGTGCCACAATTATTTTTTAAGTAGCTCAGTACAAATTAATTTAAGTAAAAAACGT TTTAGAATTTCAAATATCCTTAAATAGGAAATACTTGAACGTTTTAATGAGAAATTTCTATGGTTGAAAT TCATAGTCTTTCACTATAGGAAATGTTAAGAAAAATTTAAACAGTTTAAGATTATACAATTTTTTTTTCT TTTCTATATTGAGGTGGCCACCATACTAATATTCTAAATTTTCAATATTTGAACTTTTAACTCTTGACAT TGAAAAAAAAGGATTGGAGAAATTACCAAGATTTTAACATCTATAAAATTGGTATGTCTTAAAAGTTACT TTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAACACTGAGATGTTGTTACCAGTCCTGA GGCTGAGATTCAATAAAAACTTACAGCTGAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3586278 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3586278 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7361 same embryo
	EMAGE:7364 same embryo
	EMAGE:7360 same embryo
	EMAGE:7359 same embryo
	EMAGE:7363 same embryo
	EurExpress:euxassay_004458 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source