EMAGE mouse gene expression spatial database

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EMAGE:7650

Rbm5 RNA binding motif protein 5 ( MGI:1933204)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005314. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005314_01	euxassay_005314_02	euxassay_005314_03	euxassay_005314_04

euxassay_005314_05	euxassay_005314_06	euxassay_005314_07	euxassay_005314_08	euxassay_005314_09

euxassay_005314_10	euxassay_005314_11	euxassay_005314_12	euxassay_005314_13	euxassay_005314_14

euxassay_005314_15	euxassay_005314_16	euxassay_005314_17	euxassay_005314_18	euxassay_005314_19

euxassay_005314_20	euxassay_005314_21	euxassay_005314_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7650_wholemount_strong.wlz

7650_wholemount_moderate.wlz

7650_wholemount_weak.wlz

7650_wholemount_possible.wlz

7650_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7650_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8945
Entity Detected:	Rbm5, RNA binding motif protein 5 ( MGI:1933204)
Sequence:	sense strand is shown >T8945 GTTACCATTCTGATGGTGGAGACGCCATTTTGTGGAGCGGCCGAACCTTGTAGGAGGTTCTGGGGCGCAG AGCCGCTACTGCTCCTGCTTTGTTCCCTCTGTGGGGGGGAAAATTTAAGCCTTTTGAAGCAGTGTGCTAG CTCTTCCGTGAGACGATGGGTTCAGACAAAAGAGTGAGTAGAACAGAACGTAGTGGAAGATATGGTTCCA TCATAGATAGGGATGACCGTGATGAGCGTGAATCTAGAAGCAGGCGGCGGGACTCAGATTACAAAAGATC AAGCGATGATCGGAGAGGTGATAGATATGATGACTATCGGGACTATGATAGTCCAGAGAGAGAGCGTGAA AGAAGGAACAGTGACCGGTCTGAAGATGGCTATCATTCAGATGGTGACTATGGAGAACATGACTATAGAC ATGACATCAGTGATGAGAGAGAGAGCAAGACCATCATGCTCCGTGGCCTTCCTATCACCATCACCGAGAG CGATATTCGAGAAATGATGGAGTCCTTTGAAGGCCCTCAGCCTGCAGATGTGAGGCTGATGAAGAGGAAA ACAGGTGTAAGCCGTGGTTTCGCCTTCGTGGAGTTTTATCACTTGCAAGATGCTACCAGCTGGATGGAAG CCAATCAGAAAAAATTGGTGATTCAAGGAAAGCACATTGCAATGCATTATAGCAATCCCAGACCTAAATT TGAAGATTGGCTTTGTAACAAGTGCTGCCTTAACAATTTCAGGAAAAGACTAAAATGCTTCCGATGTGGA GCAGACAAGTTTGACTCTGAACAGGAAGTGCCCCCCGGAACCACAGAGTCTGCTCAGTCCGTGGATTACT ACTGTGATACTATCATTCTTCGGAACATAGCTCCGCACACTGTGGTGGATTCCATCATGACAGCCCTATC TCCCTATGCTTCCTTAGCTGTCAATAACATTCGCCTCATAAAAGACAAACAGACACAACAGAACAGAGGG TTTGCATTTGTGCAGCTATCTTCTGCAATGGATGCCTCTCAGCTGCTTCAGATATTACAGAGTCTCCATC CTCCATTGAAAATTGATGGGAAAACTATTGGAGTTGATTTTGCAAAAAGTGCCAGAAAAGATTTGGTCCT TCCAGATGGTAACCGAGTCAGCGCCTTCTCTGTAGCTAGTACAGCCATTGCTGCTGCTCAGTGGTCATCC ACTCAGTCTCAAAGTGGTGAAGGAGGCAGTGTTGACTACAGTTACATGCAGCCAGGCCAGGATGGCTACA CACAGTACACTCAATACTCACAGGATTACCAGCAGTTTTATCAGCAGCAAGCTGGAGGGCTGGAGTCTGA TACATCAGCTACATCAGGCACCACAGTGACTACCACCTCAGCAGCTGTAGTATCCCAAAGTCCCCAACTC TATAATCAGACCTCCAACCCACCTGGCTCTCCGACTGAGGAAGCACAGCCTAGCACTAGCACAAGTACAC AGGCCCCCGCTGCTTCCCCTACTGGTGTAGTTCCTGGTACCAAGTATGCAGTACCTGACACGTCTACTTA TCAATATGATGAATCATCAGGATATTATTATGATCCTACAACAGGGCTCTACTATGACCCTAACTCACAG TACTACTATAACTCCTTAACACAGCAGTACTTGTACTGGGATGGCGAGAAGGAGACCTACGTGCCAGCTG CAGAGGCTAGCTCGAACCAGCAGACTGGCCTGCCTTCCACAAAAGAGGGAAAGGAGAAGAAAGAAAAGCC CAAGAGCAAAACTGCTCAGCAGATTGCCAAAGACATGGAACGCTGGGCCAAGAGTTTAAATAAGCAGAAA GAAAATTTTAAAAACAGCTTTCAACCTGTCAATTCATTGAGAGAAGAAGAAAGGAGAGAATCTGCCGCAG CAGATGCTGGCTTTGCTCTTTTTGAGAAGAAGGGAGCCTTAGCTGAAAGGCAGCAACTCCTCCCTGAATT GGTGCGCAATGGAGATGAAGAAAACCCCCTTAAAAGAGGTCTGGTTGCTGCTTACAGTGGTGACAGTGAC AATGAGGAGGAGCTGGTAGAGAGACTTGAGAGTGAGGAAGAGAAACTAGCTGACTGGAAGAAGATGGCCT GCCTGCTGTGCCGACGTCAGTTCCCAAACAGAGATGCCCTGGTCAGGCACCAGCAGCTCTCCGACTTACA CAAGCAAAATATGGACATCTACCGAAGATCCAGGCTGAGCGAGCAGGAGTTGGAAGCCTTGGAGCTGAGG GAGAGAGAGATGAAATACAGAGACCGAGCAGCAGAAAGACGAGAGAAATACGGAATTCCAGAGCCCCCAG AGCCCAAGCGCAAGAAGCAGTTTGATGCTGGCACTGTGAATTACGAGCAGCCCACCAAAGATGGCATTGA CCACAGTAACATTGGCAACAAGATGCTGCAGGCTATGGGTTGGCGGGAAGGCTCAGGCTTAGGAAGAAAG TGTCAAGGCATCACAGCTCCCATTGAGGCTCAAGTCCGACTAAAAGGAGCTGGCTTGGGAGCCAAAGGCA GTGCCTATGGGTTGTCAGGTGCCGATTCCTACAAAGATGCTGTTCGGAAAGCCATGTTTGCCCGGTTCAC TGAGATGGAGTGAAACTGGGGAAGCAATGCTGAGCACAGGGAGCAAGCCATCTCCTCAGTTGCTCTTACT GCCTGTCTCTAAGGGCATGCCTTGTGCTATTAATAGTTTTAGGATGAACCACTTCATTCTGAGGGGTTCT CCTACCTTAAATGAGCTCCCTTACGTGGGTAAACAACCTTCCTTCCCACCTGAGGGACTGTGAACAGAGG GGACAATGGGCTTTTTATACTAAGGTGTATATAGTGTAAATGTAATGAGTTTTACATGTTGTAGCCTGTG TTGTGTCCCTACTTCCTGGGGGCTTGAGAAGCTCGGAGTGGTTGTCAACACCAAAGCCACCACTGTCATT TATTGTTGTTATGTCTTTTCTTGGCAATAGCCTTGTGTATATTTGTATATTATACATTTGTACAGAATTT TGGAAGATTTTCAGTCTAGCTGCCACGTCTGGCTCCTTTACAAAAGAAATACCTTCAAAAAAAAAAAAAA AAAAA
Notes:	The probe template was PCR amplified from IMAGE:6419758 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6419758 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7654 same embryo
	EMAGE:7652 same embryo
	EMAGE:7651 same embryo
	EMAGE:7655 same embryo
	EMAGE:7653 same embryo
	EurExpress:euxassay_005314 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source