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EMAGE:19473

H2-DMa histocompatibility 2, class II, locus DMa ( MGI:95921)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19473 EMAGE:19473 EMAGE:19473 EMAGE:19473 EMAGE:19473
"Pseudo-wholemount" of euxassay_006085. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006085_01 euxassay_006085_02 euxassay_006085_03 euxassay_006085_04
EMAGE:19473 EMAGE:19473 EMAGE:19473 EMAGE:19473 EMAGE:19473
euxassay_006085_05 euxassay_006085_06 euxassay_006085_07 euxassay_006085_08 euxassay_006085_09
EMAGE:19473 EMAGE:19473 EMAGE:19473 EMAGE:19473 EMAGE:19473
euxassay_006085_10 euxassay_006085_11 euxassay_006085_12 euxassay_006085_13 euxassay_006085_14
EMAGE:19473 EMAGE:19473 EMAGE:19473 EMAGE:19473 EMAGE:19473
euxassay_006085_15 euxassay_006085_16 euxassay_006085_17 euxassay_006085_18 euxassay_006085_19
EMAGE:19473 EMAGE:19473 EMAGE:19473
euxassay_006085_20 euxassay_006085_21 euxassay_006085_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19473Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19473_wholemount_strong.wlz
19473_wholemount_moderate.wlz
19473_wholemount_weak.wlz
19473_wholemount_possible.wlz
19473_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19473_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
thymus primordium
moderate moderate
single cellmoderate expression: see section 13 14 15 16 17
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6541
Entity Detected:H2-DMa, histocompatibility 2, class II, locus DMa ( MGI:95921)
Sequence:sense strand is shown

>T6541
CGACACTCGAGTGGTAGCTCCCATTTACTGTGGGTGTTAAGGTATGGAGCATGAGCAGAAGTCAGGAGCT
GTGCTGCTGAGGCTGCTGCGCCTTCTGTGGCTGCTGCCCCACTCCTGGGCGGTGCTCGAAGCATCTACAC
CAGTGTTGTGGGATGACCCACAGAACCACACATTCCGGCACACTCTATTCTGCCAGGACGGGATTCCCAA
CATAGGGCTCTCGGAGACCTACGACGAGGACGAACTCTTCTCCTTCGACTTCTCCCAGAACACCAGAGTG
CCCCAACTGCCTGACTTTGCAGAGTGGGCTCAGGGACAGGGGGATGCCTCTGCCATTGCATTTGACAAAA
GCTTCTGCGAGATGTTGATGCGGGAAGTGAGCCCGAAGCTTGAAGGTCAAATCCCAGTGTCCAGAGGTTT
GCCTGTGGCAGAGGTATTCACACTGAAGCCCCTGGAGTTTGGCAAGCCCAACACGTTGGTCTGTTTCATC
AGCAACCTCTTTCCACCGACCCTGACCGTGAACTGGCAGCTTCACTCGGCCCCTGTGGAGGGAGCCAGCC
CCACATCCATCTCAGCCGTCGATGGGCTGACCTTCCAGGCTTTCTCTTATTTAAACTTCACACCGGAACC
CTTTGACCTTTACTCCTGCACTGTGACACACGAGATTGACCGCTACACGGCAATTGCCTATTGGGTACCC
CAGAACGCCCTGCCTTCGGATCTCCTAGAGAATGCCCTGTGTGGTGTGGCCTTTGGCCTCGGTGTGCTAG
GCACCATCATAGGCATTGTCTTCTTCCTCTGCTCCCAGAGACCGTGCTCAGGTGACTGATTCTTCTCAAG
GAGATCTTGGAACAGCACAGGCCAGGCCAGCGGGGATGTCCAGGCATCTCGTGACTACCCAAGGTCTCTC
ATCGGAGCCGAAGTCCCAGGGATCCCTCAGGGTGTGTGCCAGCGTGCAGGTGTCTCAGCTGAGGGTTCCG
CTGTCCCTGGACTTGCATCCAGAAGAGCCTTCATCAGGAGCCCCAGGCTCCACCTAACCACTACCTTATA
CCTTCCCTCTTCCAGGAAATAAACTTCATTTCTTAATGTCAGCGTGACCTCTCCCTCCAAAAAAAAAAAA
AAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3591389 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3591389 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19474 same embryo
 EMAGE:19470 same embryo
 EMAGE:19472 same embryo
 EMAGE:19471 same embryo
 EurExpress:euxassay_006085 same experiment
 MGI:4825306 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS