Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:7231

Nucb2 nucleobindin 2 ( MGI:1858179)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231
"Pseudo-wholemount" of euxassay_004466. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004466_01 euxassay_004466_02 euxassay_004466_03 euxassay_004466_04
EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231
euxassay_004466_05 euxassay_004466_06 euxassay_004466_07 euxassay_004466_08 euxassay_004466_09
EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231
euxassay_004466_10 euxassay_004466_11 euxassay_004466_12 euxassay_004466_13 euxassay_004466_14
EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231
euxassay_004466_15 euxassay_004466_16 euxassay_004466_17 euxassay_004466_18 euxassay_004466_19
EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231 EMAGE:7231
euxassay_004466_20 euxassay_004466_21 euxassay_004466_22 euxassay_004466_23 euxassay_004466_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7231Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7231_wholemount_strong.wlz
7231_wholemount_moderate.wlz
7231_wholemount_weak.wlz
7231_wholemount_possible.wlz
7231_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7231_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6439
Entity Detected:Nucb2, nucleobindin 2 ( MGI:1858179)
Sequence:sense strand is shown

>T6439
GGCCTCGCGCGCCGGGACCCTGCAGAGAAGAACACACCAGTCAGTTTTTCAAGGGAAAATCCTGGGCCAG
GAGCCAAGTCCTGATCTCTACAAACTTAATATTGTGTAGATTATTTTACCACCTGAGATCTCAGTGGCCT
CATCTGTGCAAGAAAGAGAAAATTAAATAATAAAAAAGATAAAACCTTGGCCTGTCTGAAGATGAGGTGG
AGGATCATCCAAGTACAGTACTGTTTTCTCTTGGTTCCGTGCATGCTGACCGCTCTGGAAGCTGTTCCTA
TCGATGTGGACAAGACCAAAGTACACAACACTGAGCCAGTGGAAAATGCAAGGATAGAGCCACCAGATAC
TGGACTTTATTATGATGAATACCTCAAGCAAGTGATTGAAGTCTTGGAAACAGATCCACATTTCAGAGAA
AAGCTCCAGAAAGCAGACATAGAGGAGATAAGGAGCGGGAGGCTGAGTCAAGAGCTGGACTTAGTAAGTC
ACAAAGTGAGGACGAGACTGGATGAGCTGAAGAGGCAAGAAGTAGGAAGACTGCGGATGCTCATCAAAGC
TAAGCTGGATGCCCTTCAAGACACTGGCATGAATCACCACCTTCTTCTGAAGCAGTTTGAACACCTGAAC
CACCAGAATCCTAACACATTTGAATCCAGAGATTTGGATATGCTAATCAAAGCAGCTACCGCGGATCTGG
AGCAATATGACCGGACTCGGCATGAAGAGTTTAAGAAGTACGAGATGATGAAGGAACACGAGCGGAGAGA
GTATTTAAAAACGCTGAGTGAGGAGAAGAGGAAAGAAGAAGAGTCTAAGTTTGAAGAGATGAAGAGGAAG
CACGAAGACCACCCCAAAGTTAATCATCCCGGAAGCAAAGATCAACTAAAAGAGGTTTGGGAAGAGACTG
ATGGATTGGACCCTAATGACTTTGACCCCAAGACATTTTTCAAATTACATGATGTTAACAACGATGGATT
CCTGGATGAACAAGAATTAGAAGCACTATTCACAAGAGAGTTGGAGAAAGTGTATAACCCACAAAATGCA
GAGGACGATATGATAGAAATGGAAGAGGAGAGGCTCAGGATGAGAGAACACGTCATGAGTGAGATTGATA
ACAACAAAGACCGATTGGTGACTCTGGAGGAATTCCTGAGAGCTACAGAGAAGAAAGAATTCCTGGAGCC
TGATAGCTGGGAGACACTGGACCAGCAACAGTTATTCACCGAGGACGAGCTTAAAGAGTATGAAAGCATT
ATTGCTATCCAAGAGAACGAGCTTAAGAAGAGGGCGGAAGAGCTGCAGAAACAGAAGGAGGATCTGCAGC
GGCAGCACGACCACCTCGAGGCGCAGAAGCAGGAGTATCATCAGGCCGTCCAGCACCTGGAACAGAAGAA
ACTTCAACAAGGCATTGCTCCATCAGGGCCAGCGGGAGAGCTGAAGTTTGAGCCACACACATAAAGTCCT
GATGTCTGCCAGAACTTGGAAGAAAACCGTTGATTCAACATCTATTTCATCTTTCAACATCCTTTCTTTT
CTCTCCACTCAATAAATACTTTAAAGCACATTTGGAATAAAGGAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3585076 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3585076 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7233 same embryo
 EMAGE:7234 same embryo
 EMAGE:7232 same embryo
 EMAGE:7236 same embryo
 EMAGE:7235 same embryo
 EurExpress:euxassay_004466 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS