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EMAGE:11686

Gimap7 GTPase, IMAP family member 7 ( MGI:1349657)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686
"Pseudo-wholemount" of euxassay_006819. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006819_01 euxassay_006819_02 euxassay_006819_03 euxassay_006819_04
EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686
euxassay_006819_05 euxassay_006819_06 euxassay_006819_07 euxassay_006819_08 euxassay_006819_09
EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686
euxassay_006819_10 euxassay_006819_11 euxassay_006819_12 euxassay_006819_13 euxassay_006819_14
EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686
euxassay_006819_15 euxassay_006819_16 euxassay_006819_17 euxassay_006819_18 euxassay_006819_19
EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686 EMAGE:11686
euxassay_006819_20 euxassay_006819_21 euxassay_006819_22 euxassay_006819_23 euxassay_006819_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11686Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11686_wholemount_strong.wlz
11686_wholemount_moderate.wlz
11686_wholemount_weak.wlz
11686_wholemount_possible.wlz
11686_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11686_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8196
Entity Detected:Gimap7, GTPase, IMAP family member 7 ( MGI:1349657)
Sequence:sense strand is shown

>T8196
GATTCTTTGAAGAAGGTGTGAGAACTCAAAGGCCCTGCAGGAGGCACCTGGATTCCAGAGCTTCCACGTT
AAGACCATGGCTGAGCCCAGTGACAACTCTCTGAGGATTGTTCTGGTAGGGAAAACAGGAAGTGGAAAGA
GCGCCACAGCAAACACCATCCTGGGGCAAAAGAGATTTGTTTCTAGAATCGCACCCCATGCTGTCACCCA
GAACTGTCAGAGTGACTCCCGCAGGTGGAAGGAAAGAGACCTCCTGGTTGTTGATACCCCAGGGCTCTTC
GACACCAAGGTAAAACTGGAAACCACCTGCCTTGAAATCAGCCGGTGTGTCCTCCAGTCCTGCCCTGGGC
CTCATGCCATCATTCTGGTTCTGCAACTGAACCGCTTCACGGTGGAAGAGCAAGAAACTGTTATCAGGAT
CAAGGCTATCTTTGGGGAGGAAGTCATGAAGTACATGATTGTCTTGTTCACCCGCAAAGATGATCTGGAG
GACCAGAGCTTAAGCGACTTCATTGCTGACTCAGATACAAACCTGAAAAGCATCATCAAGGAGTGTGGCA
ATCGCTGCCTGGCCATCAATAACAAAGCAGAGAGGGCTGAGAGGGAAACGCAGGTGCAGGAGCTGATGGG
GCTTGTAGAAACCCTGGTGCAGAACAATGGTGGTCTCTACTTCTCCCATCCCGTATACAAGGACGCGGAG
CGAAGGCTGAAGAAGCAAGTGGAGATCTTGAGGAAAATTTACACTGACCTACCAGAGAAGGAGATTAGAA
TAGTGGAGGAGGAGTATGCTCTTAGGAAATTTAGTGCTCAGGAAAGAGAGAAAAAAATACAAGCCATTAG
GGAAAATTACAATCTGAAGATAAGAAACCTTCGTGAGGAAGCAGAGAAGAACATATTCAACCAGATTATT
GAAGAAGTTAAGAAAGTTCTTTTGAAAATATGGCATCTTTTTTCATAAGCAGTCTGCATTTTTTCACTTC
TTCTGCGCATTTTTCCACCTCACTCCTGACCACTCTCCCTGCTGACCCTTTTCTAACAGCCATTTGCAGA
TTTAAGAGATAGCAAAGCCAGGGATTCAGTGTACCAGAGTCAGGGCTCAGTGCCAGGCTCCAAGGCTGGA
TGGATCACACTCGGCCCTCTGCTCCCAATGCTAGCCTGTCCTACCGTTCCCACTATGATGCACTGAAATG
CCTCTGTAACCATGAGCCCAAATAAACACTGCTTCCCTTAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:963503 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:963503 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11689 same embryo
 EMAGE:11688 same embryo
 EMAGE:11687 same embryo
 EMAGE:11690 same embryo
 EMAGE:11685 same embryo
 EurExpress:euxassay_006819 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS