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EMAGE:30640

Cdsn ( MGI:3505689)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:30640
euxassay_004981_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8056
Entity Detected:Cdsn, ( MGI:3505689)
Sequence:sense strand is shown

>T8056
AAGAGGTAATCCGGCATAAAGGTCCCGGTGCCCATGAGCTTCTGTCAGTCAGGAGGCCACGCTGTGCACA
ATGGGTTCCTCGCAGGCACCCCGGATGGGGAGTGTGGGAGGGCACGGGCTGATGGCATTGCTGATGGCCG
GTCTTATTCTGCCAGGAATCTTGGCTAAGAGCATTGGGACCCTCTCGGACCCCTGTAAGGACCCCACGAG
GATCACCTCCCCGAATGACCCTTGTCTCATTGGAAAGACTGGCTCCAACAGCATCAGCAGCCAAGGTGGA
TCCAGCAGCTTCAGCAGCCAAGGTGGATCCAGCAGTTTCAGCAGCCATGGTGGATCCAGCAGCTCCCAGG
GAAGTTCTTCAGGATCCTTGATATATAAACCAGGAACAGGGTATTCCCAGAGTAGCTACTCTTATGGCTC
TGGCGGCTCCCGGCCAGGAGGCAGTGGCTCTCAGACAGGAAGCAGCAGCTCTCAGACAGGAAGTAGTAGC
TCTCAGTCAGGAAGCAGCGGCTCTCAGTCAGGAAGCAGTGGCTCTCAGTCAGGAAGCAGCGGCTCCCAGT
CAGGAAGCAGCGGCTCCCAGTCAGGAAGCAGCGGCTCCCAGTCAGGAAGCAGCGGCTCTCAGTCAGGAAG
ATGGGTAAGCAGCAGTTCTCAATGGGTAAGCAGCAGTTCTCAGTCCGGAAGTTCAGGAAGCAGTCGCGAC
AGACCCGGAAGTGGCTCTGCTCTACCAACCGGTGACAAGACATCAGGCATGTCTCAGTCTGGAGGCTCGT
CCACTTCCCAGAGCAGCAGCTCCAACCTGCGGCCCTGTAGCTCCAACGTGCCCGACTCTCCCTGCAGCGG
GGGGCCTGTCATCACACACTCGGGGCCCTACATCTCTGGCACCCACACCGTATCCGGTGGCCAGAGACCT
GTAGTGGTGGTAGTGGAGCACCATGGCTCTGCTGGCCCTGGGTTTCAAGGCATGCCCTGTAGCAATGGAG
GCCCCGCAGGTAAGCCCTGCCCTCCCATCACCTCTGTCCAGAAACCCTATGGCGGCTATGAGGTGGTGGG
TGGCTCTGCCAACAGTTATCTGGTCCCAGGCATGACCTACAGTGGGGGTAAAATCTACCCCGTGGGCTAC
TTCACCAAGGACAACCCTATCAGGGGCTCGCCAGGGGCCCCCTCCTTTGCAGCTGGGCCCCCAGTCTCTG
AGGGCAAGTACTTCTCTAGCAACCCCATCATCCCCAGCCGTGGCTCTTCCAGTTCCAGTGGCTACCCAGT
GGGCGTTGTGTTCCAGCCCGTGGGCTCTGGCGGGGTTCAGCCCTGTGGCACTGGCTCTGTCAGCTCTAAG
GGCCCTTGCTCGGGTACGAGAATTCAGATCACCTCCAGCAGCTCCAGTACCTCCTACCACCCCTGCAGCG
GTGGTTCTTCCCAGGGGCCTTGCTCCTCACCAGGCACCGGCTCCATCAGTGGGGGAAGCTCCTCCCTCTC
CTCTGGCAAAATCGTCCTTCAGCCCTGCGGCAGCAAATCTACCTCTTCGGGTTACCCCTGCCTTTCTGTT
CCCTCCTCCCCATTGAATGGTGGTCTGAATGGCTCTCCTCAGCCTGTCCCCTCCGTGGGTGTCAAGCTCT
GTGGCCTCAACAGCCCTGGAAGAGTGCCCTGCCGTTCCATCCGCAACATTCTGACCCAAGTGAAGCCTTT
GGGGCCCCAGTTAATGGATCCCAAAGTTTCTCTGCCACAGGGAGAGCCACAGGGAGAGCCACTTGAGAAG
TCTTAAGTCACACATGCCAGCTATTTTCCAATTGCCAGTCACCTCCCAACTGGAAGACGTCCAGGGGCCC
AGTTTCCTGCCCTCCCCCCGGGAGAGCTGCCTCACATGCTGCGGTTAGCCGGATGATGCTCTTGACTTTA
TTCAACACTCCAAATGGTGGACTCCATCCTCCTCGTCCTTTCCTGGTGCTTCTGCACCATGCTGCTGGGG
TGTTCTCTCTGTCCGATTACCTGCCTTAAAACGCACTTTTTTGACTGGGAAGTCCTCGAACACACACCTC
AACCTTGGGTGCCTGGATAAGTCAAGCATGCCTCTGCCCGTTTGCCAAATAAGGCAAAGTCCAATCCATC
GCCTGAGAACCAAACTGCATGTCTCAGCGACCCCCCCCCCCATCCGTTCAGTCAGCCCTCTAAATTGTTG
GGTTCCCACCATTCATCATGAGTTTCACCACACCCTACCAGACCCATTTCCAGCACACCTGTGCCTCTCC
TTCCCCAGCTCTCCATGTCAGTTTCTGCCTGGTTGTGCTTCACCCACAGCACAGATGTTACTCTGTGTGT
GTGTGTGCCCCAGGGCAGCCACAGAATCTGGCACAGACTCCCAGTTCCCTCTGGATCCTAGACAGGGCTC
AATAAACTTTGTGGACTTTGTGCAGACTATTTGCCTTCTTGGGGTCCAAGGTCTCTTCTTAGTTCCTGGG
TAGTAGACCTCCTGTGCTTCTAGAGGGCCTTGGTAGTACACCTCCCGTGCCTCTAGAGGGCCTGGTAGTA
CACCTCCCGTGCCTCTAGAGGGCCTGGTAGTACACCTCCCGTGCCTCTAGAGGGCTCACGTCTCCCATTT
CCATTCATAACTTGGCTCAGTGTTTCCTATATTACCCCTCCTCCCACAGAGAAGGAAAACAATAAATATT
GATTGAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30058959 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30058959 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_004981 same experiment
 EMAGE:32054 same embryo
 EMAGE:31598 same embryo
 EMAGE:30662 same embryo
 EMAGE:30986 same embryo
 EMAGE:31995 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS