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EMAGE:8176

Mdh1 malate dehydrogenase 1, NAD (soluble) ( MGI:97051)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8176 EMAGE:8176 EMAGE:8176 EMAGE:8176 EMAGE:8176
"Pseudo-wholemount" of euxassay_007435. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007435_01 euxassay_007435_02 euxassay_007435_03 euxassay_007435_04
EMAGE:8176 EMAGE:8176 EMAGE:8176 EMAGE:8176 EMAGE:8176
euxassay_007435_05 euxassay_007435_06 euxassay_007435_07 euxassay_007435_08 euxassay_007435_09
EMAGE:8176 EMAGE:8176 EMAGE:8176 EMAGE:8176 EMAGE:8176
euxassay_007435_10 euxassay_007435_11 euxassay_007435_12 euxassay_007435_13 euxassay_007435_14
EMAGE:8176 EMAGE:8176 EMAGE:8176 EMAGE:8176 EMAGE:8176
euxassay_007435_15 euxassay_007435_16 euxassay_007435_17 euxassay_007435_18 euxassay_007435_19
EMAGE:8176 EMAGE:8176 EMAGE:8176
euxassay_007435_20 euxassay_007435_21 euxassay_007435_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8176Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8176_wholemount_strong.wlz
8176_wholemount_moderate.wlz
8176_wholemount_weak.wlz
8176_wholemount_possible.wlz
8176_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8176_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9087
Entity Detected:Mdh1, malate dehydrogenase 1, NAD (soluble) ( MGI:97051)
Sequence:sense strand is shown

>T9087
GTAGAGGTGACCTGACTGCTGGAGACTGCCTTTTGCAGGTGCAGAGATCGGCCTTGCAGTTTGCAATAAT
GTCTGAACCAATCAGAGTCCTTGTGACTGGAGCAGCTGGTCAAATTGCATATTCACTGTTGTACAGTATT
GGAAATGGATCTGTCTTTGGGAAAGACCAGCCCATCATTCTTGTGCTGTTGGACATCACCCCCATGATGG
GTGTTCTGGACGGTGTCCTGATGGAACTGCAAGACTGTGCCCTTCCCCTTCTGCAGGATGTCATTGCAAC
GGACAAAGAAGAGATTGCCTTCAAAGACCTGGATGTGGCTGTCCTAGTGGGCTCCATGCCAAGAAGGGAA
GGCATGGAGAGGAAGGACCTACTGAAAGCCAATGTGAAAATCTTCAAATCCCAGGGCACAGCCTTGGAGA
AATACGCCAAGAAATCAGTTAAGGTCATTGTTGTGGGAAACCCAGCCAATACGAACTGCCTGACAGCCTC
CAAGTCAGCGCCATCGATCCCCAAGGAGAATTTCAGTTGCCTGACTCGCTTGGACCACAACCGAGCAAAA
TCTCAAATTGCTCTTAAACTCGGTGTAACCGCTGATGATGTAAAGAATGTCATTATCTGGGGAAATCATT
CATCGACCCAGTATCCAGATGTCAATCATGCCAAGGTGAAACTGCAAGGAAAGGAAGTCGGTGTGTATGA
AGCCCTGAAAGACGACAGCTGGCTGAAGGGAGAGTTCATCACGACTGTGCAACAGCGTGGTGCTGCTGTC
ATCAAGGCTCGGAAGCTGTCCAGTGCAATGTCTGCTGCGAAAGCCATCGCAGACCACATCAGAGACATCT
GGTTTGGAACCCCAGAGGGAGAGTTCGTGTCGATGGGTGTTATCTCTGATGGCAACTCCTATGGTGTCCC
TGATGACCTGCTCTACTCATTCCCTGTCGTGATCAAGAATAAGACCTGGAAGTTTGTTGAAGGCCTCCCC
ATTAATGACTTCTCCCGTGAAAAGATGGACCTGACAGCAAAGGAGCTGACCGAGGAAAAGGAGACCGCTT
TTGAGTTTCTCTCCTCTGCGTGACTAGACACTCGTTTTGACATCAGCAGACAGCCGAAGGCTGAGGAATC
AAAATGTCGTCTTTGAGCCTAGTACCAAACAGTAATAATGCTACATTCAAATTGTGAACAGCAAAATATT
TTAAATAGTGTGTGCTTTATGATTTGTGAAAGTCTATCATGTTGTTAGTGCTGCAATCTAAATAAAAGTA
TATTCAAGTGAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6820601 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6820601 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8178 same embryo
 EMAGE:8173 same embryo
 EMAGE:8177 same embryo
 EMAGE:8174 same embryo
 EMAGE:8175 same embryo
 EurExpress:euxassay_007435 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS