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EMAGE:8177

Tmem50a transmembrane protein 50A ( MGI:1919067)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177
"Pseudo-wholemount" of euxassay_005251. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005251_01 euxassay_005251_02 euxassay_005251_03 euxassay_005251_04
EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177
euxassay_005251_05 euxassay_005251_06 euxassay_005251_07 euxassay_005251_08 euxassay_005251_09
EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177
euxassay_005251_10 euxassay_005251_11 euxassay_005251_12 euxassay_005251_13 euxassay_005251_14
EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177
euxassay_005251_15 euxassay_005251_16 euxassay_005251_17 euxassay_005251_18 euxassay_005251_19
EMAGE:8177 EMAGE:8177 EMAGE:8177 EMAGE:8177
euxassay_005251_20 euxassay_005251_21 euxassay_005251_22 euxassay_005251_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8177Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8177_wholemount_strong.wlz
8177_wholemount_moderate.wlz
8177_wholemount_weak.wlz
8177_wholemount_possible.wlz
8177_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8177_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9088
Entity Detected:Tmem50a, transmembrane protein 50A ( MGI:1919067)
Sequence:sense strand is shown

>T9088
GCCGCGACTCCCAACTCCGGACTTGGACTGACCTGAAAAGATGTCTGGATTTCTAGAAGGCTCGAGGTGC
TCTGAGTGCATGGACTGGGGGGAGAAGCGGAACACGATCGCCTCCATCGCTGCTGGCGTTCTATTTTTCA
CGGGATGGTGGATCATCATAGACGCGGCTGTCATGTACCCCAGGATGGATCAATTCAACCATTCATACCA
TACCTGTGGCGTCATAGCAACCATAGCCTTCCTCATGATTAACGCAGTATCGAACGGGCAAGTGCGAGGC
GACAGCTACAGCGAAGGCTGTCTGGGCCAGACAGGAGCTCGCATCTGGCTCTTCATCGGCTTCATGTTGG
CTTTCGGATCCCTGATTGCCTCCATGTGGATTCTCTTTGGAGGTTATGTCGCTAAGGAAAAGGACGTAGT
GTATCCTGGGATTGCTGTATTTTTCCAGAATGCCTTCATCTTTTTTGGAGGGCTGGTTTTCAAGTTTGGC
CGTACGGAGGACTTGTGGCAGTGAAGACGTCGCTTCTGCAACACAGCCGCCGTGCATGGGCTTCTTTTTG
CACCCTGCTCACCCACCCAGTCTTTTGTAATACTGTTTTCTAAACTTATTTCTGAGTATAATCTCAGCTT
GAAATTGTATAATGCTAGAATCATGAGAGCTCCTATGTGTACTGCAGCAGCCCAGTGTGGCGTGAGCCCC
ATCAGCTTTTACCACAGGAAAGGAAACCGCTGACGTGAGTCGCTTCTGCCAGCTTCTATCATGGTCTAAA
GAGTTGGTGATGCAGGCCAGGCGTGGTGGCACATACCTTTAATCCCAGCACTCGGGAGGCGGAGGCAGGC
GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGCAGAGAAACC
CTGTCTCGAAAAACCAAAAAAAAAAAAACAAAAAAACAAAAGAGTTGTTGATGGAGAAATGGTGGAGTCT
TTGGGGTGAGGATTCGCTCTGGGGTCCAAAGTGTTTATTAACGCGGCCTCTTCTATGTCCGGTGTTGAAT
AATGTGTAAACATTTTCTTGTTATTAAAAACTATTTAGTGGTCAGAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6820666 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6820666 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8178 same embryo
 EMAGE:8173 same embryo
 EMAGE:8174 same embryo
 EMAGE:8176 same embryo
 EMAGE:8175 same embryo
 EurExpress:euxassay_005251 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS